%0 Journal Article %1 Saito2012Travel %A Saito, Rintaro %A Smoot, Michael E. %A Ono, Keiichiro %A Ruscheinski, Johannes %A Wang, Peng-Liang L. %A Lotia, Samad %A Pico, Alexander R. %A Bader, Gary D. %A Ideker, Trey %D 2012 %I Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. %J Nature methods %K cytoscape plugin software %N 11 %P 1069--1076 %R 10.1038/nmeth.2212 %T A travel guide to Cytoscape plugins. %U http://dx.doi.org/10.1038/nmeth.2212 %V 9 %X Cytoscape is open-source software for integration, visualization and analysis of biological networks. It can be extended through Cytoscape plugins, enabling a broad community of scientists to contribute useful features. This growth has occurred organically through the independent efforts of diverse authors, yielding a powerful but heterogeneous set of tools. We present a travel guide to the world of plugins, covering the 152 publicly available plugins for Cytoscape 2.5-2.8. We also describe ongoing efforts to distribute, organize and maintain the quality of the collection.

@article{Saito2012Travel, abstract = {Cytoscape is open-source software for integration, visualization and analysis of biological networks. It can be extended through Cytoscape plugins, enabling a broad community of scientists to contribute useful features. This growth has occurred organically through the independent efforts of diverse authors, yielding a powerful but heterogeneous set of tools. We present a travel guide to the world of plugins, covering the 152 publicly available plugins for Cytoscape 2.5-2.8. We also describe ongoing efforts to distribute, organize and maintain the quality of the collection.}, added-at = {2018-12-02T16:09:07.000+0100}, author = {Saito, Rintaro and Smoot, Michael E. and Ono, Keiichiro and Ruscheinski, Johannes and Wang, Peng-Liang L. and Lotia, Samad and Pico, Alexander R. and Bader, Gary D. and Ideker, Trey}, biburl = {https://www.bibsonomy.org/bibtex/2820b70bdf55b5e71e6670f7ec8acfc2a/karthikraman}, citeulike-article-id = {11624617}, citeulike-linkout-0 = {http://dx.doi.org/10.1038/nmeth.2212}, citeulike-linkout-1 = {http://dx.doi.org/10.1038/nmeth.2212}, citeulike-linkout-2 = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3649846/}, citeulike-linkout-3 = {http://view.ncbi.nlm.nih.gov/pubmed/23132118}, citeulike-linkout-4 = {http://www.hubmed.org/display.cgi?uids=23132118}, day = 6, doi = {10.1038/nmeth.2212}, interhash = {a36a2708287a711853c8156fba647be4}, intrahash = {820b70bdf55b5e71e6670f7ec8acfc2a}, issn = {1548-7105}, journal = {Nature methods}, keywords = {cytoscape plugin software}, month = nov, number = 11, pages = {1069--1076}, pmcid = {PMC3649846}, pmid = {23132118}, posted-at = {2012-11-27 04:43:41}, priority = {2}, publisher = {Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.}, timestamp = {2018-12-02T16:09:07.000+0100}, title = {A travel guide to Cytoscape plugins.}, url = {http://dx.doi.org/10.1038/nmeth.2212}, volume = 9, year = 2012 }