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1zqfang/GSEApy: Gene Set Enrichment Analysis in Python
https://github.com/zqfang/GSEApy
3 years ago by @becker
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enrichment
set
database
gene
python
data
py
api
analysis
base
enrichmentsetdatabasegenepythondatapyapianalysisbase
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1User Impersonation with X-Pack: Integrating Third Party Auth with Kibana | Elastic
https://www.elastic.co/blog/user-impersonation-with-x-pack-integrating-third-party-auth-with-kibana
7 years ago by @becker
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kibana
permission
oauth2
es
security
eva
platform
permissions
database
elasticsearch
elastic
p2map
oauth
search
xpack
kibanapermissionoauth2essecurityevaplatformpermissionsdatabaseelasticsearchelasticp2mapoauthsearchxpack
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1android - Singleton Room database in SyncAdapter to trigger LiveData - Stack Overflow
https://stackoverflow.com/questions/47606994/singleton-room-database-in-syncadapter-to-trigger-livedata
7 years ago by @becker
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adapter
process
upload
android
widenoise2
syncadapter
sync
sql
room
database
dev
background
wn2
db
sqllite
adapterprocessuploadandroidwidenoise2syncadaptersyncsqlroomdatabasedevbackgroundwn2dbsqllite
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1apache/fluo-uno: Uno (an Apache Fluo project) sets up Apache Accumulo or Apache Fluo on a single machine for development
https://github.com/apache/fluo-uno
7 years ago by @becker
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accumulo
no
apache
database
install
uno
one
setup
sql
easy
config
nosql
accumulonoapachedatabaseinstallunoonesetupsqleasyconfignosql
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1Please stop calling databases CP or AP — Martin Kleppmann’s blog
https://martin.kleppmann.com/2015/05/11/please-stop-calling-databases-cp-or-ap.html
7 years ago by @becker
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no
cap
database
theorem
critique
sql
bash
nosql
nocapdatabasetheoremcritiquesqlbashnosql
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11. Architecture and Data Model - Accumulo [Book]
https://www.safaribooksonline.com/library/view/accumulo/9781491947098/ch01.html
7 years ago by @becker
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accumulo
database
data
distributed
hadoop
db
nosql
accumulodatabasedatadistributedhadoopdbnosql
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1Small set of commands to download a database file (or any file) from an android device using `adb`
https://gist.github.com/mgbckr/5a8777bdc033847ac4cae18ef6f7badd
7 years ago by @becker
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pull
polar
database
file
watch
android
wear
shell
m600
download
db
adb
pullpolardatabasefilewatchandroidwearshellm600downloaddbadb
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1A Comparison of Time Series Databases and Netsil’s Use of Druid
https://blog.netsil.com/a-comparison-of-time-series-databases-and-netsils-use-of-druid-db805d471206
8 years ago by @becker
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comparison
database
series
time
db
databases
comparisondatabaseseriestimedbdatabases
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1Apache Tomcat 7 (7.0.72) - The Tomcat JDBC Connection Pool
https://tomcat.apache.org/tomcat-7.0-doc/jdbc-pool.html
9 years ago by @nosebrain
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tomcat
database
connection
jdbc
pool
tomcatdatabaseconnectionjdbcpool
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1Hermitage: Testing the “I” in ACID — Martin Kleppmann’s blog
https://martin.kleppmann.com/2014/11/25/hermitage-testing-the-i-in-acid.html
9 years ago by @jaeschke
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acid
database
isolation
sql
base
nosql
aciddatabaseisolationsqlbasenosql
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1Yet another tool to read power production of $MA solar inverters - Home
https://sbfspot.codeplex.com/
9 years ago by @hotho
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read
database
pv
data
sma
readdatabasepvdatasma
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3Scopus | The largest database of peer-reviewed literature | Elsevier
https://www.elsevier.com/solutions/scopus
9 years ago by @nosebrain
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database
abstracts
citation
scopus
databaseabstractscitationscopus
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1About WordNet - WordNet - About WordNet
http://wordnet.princeton.edu/wordnet/
10 years ago by @nosebrain
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database
lexical
large
wordnet
english
databaselexicallargewordnetenglish
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2Apache Sqoop
Apache Sqoop(TM) is a tool designed for efficiently transferring bulk data between Apache Hadoop and structured datastores such as relational databases.
12 years ago by @nosebrain
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apache
transfer
database
sqoop
hadoop
relational
apachetransferdatabasesqoophadooprelational
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2AsterixDB
http://asterixdb.ics.uci.edu/
12 years ago by @jaeschke
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asterix
cluster
database
data
big
asterixclusterdatabasedatabig
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1Main Page - Scientistsdb
http://www.scientistsdb.com/index.php?title=Main_Page
12 years ago by @jaeschke
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science
database
wiki
gaw
scientistdb
sciencedatabasewikigawscientistdb
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1ScientistsDB – A wiki for scientists, about scientists, by scientists « ChemConnector Blog
http://www.chemconnector.com/2012/01/01/scientistsdb-a-wiki-for-scientists-about-scientists-by-scientists/
12 years ago by @jaeschke
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science
scientistsdb
database
wiki
gaw
sciencescientistsdbdatabasewikigaw
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1Welcome to MariaDB! - MariaDB
https://mariadb.org/
12 years ago by @nosebrain
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database
mariadb
mysql
relational
databasemariadbmysqlrelational
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3Apache Derby
http://db.apache.org/derby/
13 years ago by @nosebrain
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java
database
derby
relational
embedded
javadatabasederbyrelationalembedded
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1ODBMS.ORG :: Object Database (ODBMS) | Object-Oriented Database (OODBMS) | Free Resource Portal
Free Downloads and Links - ODBMS.ORG was created to serve faculty and students at educational and research institutions as well as OO software developers in the open source community or at commercial companies.
13 years ago by @hotho
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cloud
slides
reduce
database
computing
data
map
big
cloudslidesreducedatabasecomputingdatamapbig
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2Scalable Distributed Algorithm for Approximate Nearest Neighbor Search Problem in High Dimensional General Metric Spaces
Y. Malkov, A. Ponomarenko, A. Logvinov, and V. Krylov. Similarity Search and Applications, page 132--147. Berlin, Heidelberg, Springer Berlin Heidelberg, (2012)
9 months ago by @jaeschke
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approximate
small
distance
metric
space
nearest
neighbor
world
database
similarity
hnsw
vector
search
approximatesmalldistancemetricspacenearestneighborworlddatabasesimilarityhnswvectorsearch
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1Data Dependencies Extended for Variety and Veracity: A Family Tree
S. Song, F. Gao, R. Huang, and C. Wang. IEEE Transactions on Knowledge and Data Engineering, 34 (10): 4717-4736 (October 2022)
2 years ago by @jaeschke
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database
dependency
data
function
relation
survey
databasedependencydatafunctionrelationsurvey
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1Relaxed Functional Dependencies—A Survey of Approaches
L. Caruccio, V. Deufemia, and G. Polese. IEEE Transactions on Knowledge and Data Engineering, 28 (1): 147-165 (January 2016)
2 years ago by @jaeschke
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database
dependency
data
function
relation
survey
databasedependencydatafunctionrelationsurvey
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2SoChainDB: A Database for Storing and Retrieving Blockchain-Powered Social Network Data
H. Nguyen, D. Bozhkov, Z. Ahmadi, N. Nguyen, and T. Doan. Proceedings of the 45th International ACM SIGIR Conference on Research and Development in Information Retrieval, ACM, (July 2022)
3 years ago by @erichoang
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myown
blockchain
database
social
datasets
analysis
decentralized
network
networks
applications
myownblockchaindatabasesocialdatasetsanalysisdecentralizednetworknetworksapplications
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1Pharmacogenomics knowledge for personalized medicine
M. Whirl-Carrillo, E. McDonagh, J. Hebert, L. Gong, K. Sangkuhl, C. Thorn, R. Altman, and T. Klein. Clinical Pharmacology & Therapeutics, 92 (4): 414--417 (2012)
3 years ago by @becker
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personalized
database
pharmacogenomics
medicine
citedby:scholar:timestamp:2022-6-17
citedby:scholar:count:1674
knowledge
personalizeddatabasepharmacogenomicsmedicinecitedby:scholar:timestamp:2022-6-17citedby:scholar:count:1674knowledge
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1Integrated intra-and intercellular signaling knowledge for multicellular omics analysis
D. Türei, A. Valdeolivas, L. Gul, N. Palacio-Escat, M. Klein, O. Ivanova, M. Ölbei, A. Gábor, F. Theis, D. Módos and 1 other author(s). Molecular systems biology, 17 (3): e9923 (2021)
3 years ago by @becker
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immune
project:iti-single-cell
citedby:scholar:count:35
network
networks
cell
citedby:scholar:timestamp:2022-2-23
cells
system
database
pubmed
mining
background
text
cytokines
knowledge
immuneproject:iti-single-cellcitedby:scholar:count:35networknetworkscellcitedby:scholar:timestamp:2022-2-23cellssystemdatabasepubmedminingbackgroundtextcytokinesknowledge
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1Immune-centric network of cytokines and cells in disease context identified by computational mining of PubMed
K. Kveler, E. Starosvetsky, A. Ziv-Kenet, Y. Kalugny, Y. Gorelik, G. Shalev-Malul, N. Aizenbud-Reshef, T. Dubovik, M. Briller, J. Campbell and 1 other author(s). Nature biotechnology, 36 (7): 651--659 (2018)
3 years ago by @becker
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citedby:scholar:count:51
immune
project:iti-single-cell
network
networks
cell
citedby:scholar:timestamp:2022-2-23
cells
system
database
pubmed
mining
background
text
cytokines
knowledge
citedby:scholar:count:51immuneproject:iti-single-cellnetworknetworkscellcitedby:scholar:timestamp:2022-2-23cellssystemdatabasepubmedminingbackgroundtextcytokinesknowledge
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2ViruSurf: an integrated database to investigate viral sequences
A. Canakoglu, P. Pinoli, A. Bernasconi, T. Alfonsi, D. Melidis, and S. Ceri. Nucleic acids research, 49 (D1): D817--D824 (October 2021)
4 years ago by @damianosmel
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myown
database
bioinformatics
sarscov2
viralgenomes
myowndatabasebioinformaticssarscov2viralgenomes
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4Datenbanksysteme – Eine Einführung
A. Kemper, and A. Eickler. Oldenbourg Verlag, 10. aktualisierte und erweiterte Auflage edition, (2015)
5 years ago by @jaeschke
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kemper
database
book
mk3.3
sql
dbms
ddm
db
datenbank
kemperdatabasebookmk3.3sqldbmsddmdbdatenbank
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1Introducing the global terrorism database
G. LaFree, and L. Dugan. Terrorism and political violence, 19 (2): 181--204 (2007)
5 years ago by @nosebrain
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dataset
database
killbert
terrorism
datasetdatabasekillbertterrorism
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1STRENDA DB: enabling the validation and sharing of enzyme kinetics data
N. Swainston, A. Baici, B. Bakker, A. Cornish-Bowden, P. Fitzpatrick, P. Halling, T. Leyh, C. O'Donovan, F. Raushel, U. Reschel and 9 other author(s). FEBS J, 285 (12): 2193-2204 (2018)
6 years ago by @brenda_bs
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myown
database
metabolism
pathways
bibsonomy
enzyme
kinetics
myowndatabasemetabolismpathwaysbibsonomyenzymekinetics
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1The BRENDA enzyme information system–From a database to an expert system
I. Schomburg, L. Jeske, M. Ulbrich, S. Placzek, A. Chang, and D. Schomburg. Journal of Biotechnology, (April 2017)
8 years ago by @brenda_bs
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myown
database
BRENDA
metabolism
pathways
enzyme
myowndatabaseBRENDAmetabolismpathwaysenzyme
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1BRENDA in 2017: new perspectives and new tools in BRENDA.
S. Placzek, I. Schomburg, A. Chang, L. Jeske, M. Ulbrich, J. Tillack, and D. Schomburg. Nucleic Acids Research, 45 (Database-Issue): D380-D388 (2017)
8 years ago by @brenda_bs
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myown
database
maps
BRENDA
metabolism
pathways
word
enzyme
myowndatabasemapsBRENDAmetabolismpathwayswordenzyme
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1BRENDA – Von der Datenbank zum Kompetenzzentrum
D. Schomburg, and I. Schomburg. Systembiologie, (April 2016)
8 years ago by @brenda_bs
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biology
systems
database
BRENDA
pathways
bibsonomy
enzyme
biologysystemsdatabaseBRENDApathwaysbibsonomyenzyme
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3BRENDA in 2015: exciting developments in its 25th year of existence
A. Chang, I. Schomburg, S. Placzek, L. Jeske, M. Ulbrich, M. Xiao, C. Sensen, and D. Schomburg. Nucleic Acids Research, 43 (Database-Issue): 439-446 (2015)
9 years ago by @l3s
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ligands
database
maps
reactions
word
textmining
enzyme
ontology
ligandsdatabasemapsreactionswordtextminingenzymeontology
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19From data mining to knowledge discovery in databases
U. Fayyad, G. Piatetsky-Shapiro, and P. Smyth. AI magazine, 17 (3): 37 (1996)
9 years ago by @nosebrain
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database
mining
data
discovery
knowledge
databaseminingdatadiscoveryknowledge
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3BRENDA in 2015: exciting developments in its 25th year of existence
A. Chang, I. Schomburg, S. Placzek, L. Jeske, M. Ulbrich, M. Xiao, C. Sensen, and D. Schomburg. Nucleic Acids Research, 43 (Database-Issue): 439-446 (2015)
9 years ago by @brenda_bs
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ligands
database
maps
reactions
word
textmining
enzyme
ontology
ligandsdatabasemapsreactionswordtextminingenzymeontology
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2Flexible database-assisted graphical representation of metabolic networks for model comparison and the display of experimental data
J. Tillack, M. Bende, M. Rother, M. Scheer, S. Ulas, and D. Schomburg. (2014)
11 years ago by @brenda_bs
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myown
database
graphical
2014
German
Conference
Bioinformatics
representation
on
myowndatabasegraphical2014GermanConferenceBioinformaticsrepresentationon
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1BRENDA in 2015: exciting developments in its 25th year of existence
A. Chang, I. Schomburg, S. Placzek, L. Jeske, M. Ulbrich, M. Xiao, C. Sensen, and D. Schomburg. Nucleic Acids Research, (2014)
11 years ago by @brenda_bs
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myown
system
web
database
information
enzyme
myownsystemwebdatabaseinformationenzyme
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2F1: A Distributed SQL Database That Scales
J. Shute, R. Vingralek, B. Samwel, B. Handy, C. Whipkey, E. Rollins, M. Oancea, K. Littleﬁeld, D. Menestrina, S. Ellner and 4 other author(s). VLDB, (2013)
12 years ago by @nosebrain
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database
distributed
f1
google
sql
databasedistributedf1googlesql
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