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The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks.

, , , , , and . Bioinform., 22 (11): 1406-1407 (2006)

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Density of States, Metastable States, and Saddle Points: Exploring the Energy Landscape of an RNA Molecule., , , and . ISMB, page 88-91. AAAI, (1997)The Graph Grammar Library - A Generic Framework for Chemical Graph Rewrite Systems., , and . ICMT, volume 7909 of Lecture Notes in Computer Science, page 52-53. Springer, (2013)In Silico Evolution of Early Metabolism., , , and . ALIFE, page 57-64. MIT Press, (2010)Atom Mapping with Constraint Programming., , , , , and . CP, volume 8124 of Lecture Notes in Computer Science, page 805-822. Springer, (2013)Explicit Collision Simulation of Chemical Reactions in a Graph Based Artificial Chemistry., , and . ECAL, volume 3630 of Lecture Notes in Computer Science, page 725-733. Springer, (2005)RNA In Silico The Computational Biology of RNA Secondary Structures., , and . Adv. Complex Syst., 2 (1): 65-100 (1999)Partition function and base pairing probabilities of RNA heterodimers., , , , , and . Algorithms Mol. Biol., (2006)Using the RNA sequence-to-structure map for functional evolution of ribozyme catalyzed artificial metabolisms., , and . ALIFE, page 813. MIT Press, (2008)Towards an Optimal DNA-Templated Molecular Assembler., , , and . ALIFE, page 557-564. MIT Press, (2014)Efficient Algorithms for Co-folding of Multiple RNAs., , , and . BIOSTEC (Selected Papers), volume 1400 of Communications in Computer and Information Science, page 193-214. Springer, (2020)