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Dirichlet Mixtures, the Dirichlet Process, and the Structure of Protein Space., , and . J. Comput. Biol., 20 (1): 1-18 (2013)Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations., and . PLoS Comput. Biol., (2016)The effectiveness of position- and composition-specific gap costs for protein similarity searches., , , and . ISMB, page 15-23. (2008)A structure-based method for protein sequence alignment., , , , , and . Bioinform., 21 (8): 1451-1456 (2005)Applications and Statistics for multiple hight-scoring segments in molecular Sequences, and . Proceedings of the National Academy of Sciences of the United States of America (PNAS), (1993)IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices., , , , , and . Bioinform., 15 (12): 1000-1011 (1999)Local Alignment (with Affine Gap Weights)., , and . Encyclopedia of Algorithms, Springer, (2008)Optimal Sequence Alignment using Affine Gap Costs, and . Bulletin of Mathematical Biology, 48 (5-6): 603--616 (1986)Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, , , , , , and . Nucleic acids research, 25 (17): 3389 (1997)Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties., and . PLoS Comput. Biol., (2016)