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Simultaneous Alignment and Folding of Protein Sequences., , , , , and . RECOMB, volume 5541 of Lecture Notes in Computer Science, page 339-355. Springer, (2009)Vernal: a tool for mining fuzzy network motifs in RNA., , , , and . Bioinform., 38 (4): 970-976 (2022)A Nested 2-Level Cross-Validation Ensemble Learning Pipeline Suggests a Negative Pressure Against Crosstalk snoRNA-mRNA Interactions in Saccharomyces cerevisiae., , and . J. Comput. Biol., 27 (3): 390-402 (2020)Stochastic Sampling of Structural Contexts Improves the Scalability and Accuracy of RNA 3D Module Identification., , , , , and . RECOMB, volume 12074 of Lecture Notes in Computer Science, page 186-201. Springer, (2020)A Nested 2-Level Cross-Validation Ensemble Learning Pipeline Suggests a Negative Pressure Against Crosstalk snoRNA-mRNA Interactions in Saccharomyces Cerevisae., , and . RECOMB, volume 10812 of Lecture Notes in Computer Science, page 177-193. Springer, (2018)Simultaneous Alignment and Folding of Protein Sequences., , , , , and . J. Comput. Biol., 21 (7): 477-491 (2014)Computing the Partition Function and Sampling for Saturated Secondary Structures of RNA, with Respect to the Turner Energy Model., and . J. Comput. Biol., 14 (2): 190-215 (2007)Investigating Mutations to Reduce Huntingtin Aggregation by Increasing Htt-N-Terminal Stability and Weakening Interactions with PolyQ Domain., , and . Comput. Math. Methods Medicine, (2016)Exploration of the Dynamic Properties of Protein Complexes Predicted from Spatially Constrained Protein-Protein Interaction Networks., , , and . PLoS Comput. Biol., (2014)Predicting Positions of Bridging Water Molecules in Nucleic Acid-Ligand Complexes., , , and . J. Chem. Inf. Model., 59 (6): 2941-2951 (2019)