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Transcription start site associated RNAs (TSSaRNAs) are ubiquitous in all domains of life., , , , and . PloS one, 9 (9): e107680 (2014)The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications., , , and . BMC Bioinform., (2007)Model-based deconvolution of genome-wide DNA binding., , and . Bioinform., 24 (3): 396-403 (2008)Evolution of context dependent regulation by expansion of feast/famine regulatory proteins., , , , , , , , , and . BMC Syst. Biol., (2014)Bicluster Sampled Coherence Metric (BSCM) provides an accurate environmental context for phenotype predictions., , , , , , and . BMC Syst. Biol., 9 (S-2): S1 (2015)A high-resolution network model for global gene regulation in Mycobacterium tuberculosis., , , , , , , , and . Nucleic acids research, 42 (18): 11291--11303 (Feb 1, 2015)Parallel evolution of transcriptome architecture during genome reorganization, , , , , , , , , and 5 other author(s). Genome Research, 21 (11): 1892--1904 (Nov 1, 2011)Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis., , , , , , , , , and 6 other author(s). BMC Syst. Biol., (2010)miRvestigator: web application to identify miRNAs responsible for co-regulated gene expression patterns discovered through transcriptome profiling., , and . Nucleic Acids Res., 39 (Web-Server-Issue): 125-131 (2011)The Gaggle: An open-source software system for integrating bioinformatics software and data sources., , , and . BMC Bioinform., (2006)