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Assessment of CASP7 structure predictions for template free targets, , , and . Proteins: Structure, Function, and Bioinformatics, 9999 (9999): NA (2007)Transcription Factor Binding Probabilities in Orthologous Promoters: An Alignment-Free Approach to the Inference of Functional Regulatory Targets., and . RECOMB-CG, volume 5817 of Lecture Notes in Computer Science, page 229-240. Springer, (2009)Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells, , , , , , , , , and 13 other author(s). Cell, 133 (6): 1106-1117 (2008)Inferring Transcription Factor Targets from Gene Expression Changes and Predicted Promoter Occupancy., , , , , and . J. Comput. Biol., 16 (2): 357-368 (2009)Towards a rigorous assessment of systems biology models: the DREAM3 challenges., , , , , , , , and . PloS one, 5 (2): e9202+ (Feb 23, 2010)Computer and Statistical Analysis of Transcription Factor Binding and Chromatin Modifications by ChIP-seq data in Embryonic Stem Cell., , , , , , , , , and 4 other author(s). J. Integr. Bioinform., (2012)Blurring of High-Resolution Data Shows that the Effect of Intrinsic Nucleosome Occupancy on Transcription Factor Binding is Mostly Regional, Not Local., , , and . PLoS Comput. Biol., (2010)Rank order metrics for quantifying the association of sequence features with gene regulation., and . Bioinform., 19 (2): 212-218 (2003)