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BeWith: A Between-Within Method for Module Discovery in Cancer using Integrated Analysis of Mutual Exclusivity, Co-occurrence and Functional Interactions (Extended Abstract)., , , , and . RECOMB, volume 10229 of Lecture Notes in Computer Science, page 370-371. (2017)Ups and Downs of Poised RNA Polymerase II in B-Cells., , , , and . PLoS Comput. Biol., (2016)ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms., , , , , , , , and . Bioinform., 30 (5): 644-651 (2014)AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments., , , , , , , , , and . RECOMB, volume 9649 of Lecture Notes in Computer Science, page 261-262. Springer, (2016)CLIIQ: Accurate Comparative Detection and Quantification of Expressed Isoforms in a Population., , , , , , , and . WABI, volume 7534 of Lecture Notes in Computer Science, page 178-189. Springer, (2012)Combinatorial QSAR Modeling of Chemical Toxicants Tested against Tetrahymena pyriformis., , , , , , , , , and . J. Chem. Inf. Model., 48 (4): 766-784 (2008)Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery., , , , , , , and . Bioinform., 26 (12): 350-357 (2010)Assessment of network module identification across complex diseases, , , , , , , , , and 168 other author(s). Nature Methods, 16 (9): 843--852 (2019)N-Grammer: Augmenting Transformers with latent n-grams., , , , , , , , , and 5 other author(s). CoRR, (2022)Biomolecular network motif counting and discovery by color coding., , , , and . ISMB, page 241-249. (2008)