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node.dating: dating ancestors in phylogenetic trees in R., and . Bioinform., 33 (6): 932-934 (2017)Optimized phylogenetic clustering of HIV-1 sequence data for public health applications., , , , , , and . PLoS Comput. Biol., 18 (11): 1010745 (November 2022)An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1., , , , , , , , , and . PLoS Comput. Biol., (2009)Workshop: Error correction, noise filtering, and phylogenetic analysis of HIV sequences using the 454 platform., , , , , , and . ICCABS, page 1. IEEE Computer Society, (2012)Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology., , , and . Bioinform., 26 (19): 2455-2457 (2010)sierra-local: A lightweight standalone application for drug resistance prediction., , , and . J. Open Source Softw., 4 (33): 1186 (2019)Evolutionary Interactions between N-Linked Glycosylation Sites in the HIV-1 Envelope., , , and . PLoS Comput. Biol., (2007)Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data., , , , , , and . PLoS Comput. Biol., (2012)A model-based clustering method to detect infectious disease transmission outbreaks from sequence variation., and . PLoS Comput. Biol., (2017)Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models., , , and . Bioinform., 24 (17): 1949-1950 (2008)