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Virus evolution and transmission in an ever more connected world

, , and . Proceedings of the Royal Society of London B: Biological Sciences, (2015)
DOI: 10.1098/rspb.2014.2878

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SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference., , , , , and . Bioinform., 21 (7): 1274-1275 (2005)SERAPHIM: studying environmental rasters and phylogenetically informed movements., , , , and . Bioinform., 32 (20): 3204-3206 (2016)Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape., , , , , , , , , and 1 other author(s). BMC Bioinform., (2010)Virus genomes reveal factors that spread and sustained the Ebola epidemic., , , , , , , , , and 86 other author(s). Nat., 544 (7650): 309-315 (2017)Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework., , , , , , , , and . IWBBIO, page 555-556. Copicentro Editorial, (2013)Bayesian Phylogeography Finds Its Roots., , , and . PLoS Comput. Biol., (2009)A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection., , , , and . Bioinform., 28 (24): 3248-3256 (2012)Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST., , , and . Bioinform., 33 (12): 1798-1805 (2017)Deep Reinforcement Learning for Large-Scale Epidemic Control., , , , , , and . ECML/PKDD (5), volume 12461 of Lecture Notes in Computer Science, page 155-170. Springer, (2020)Efficient Bayesian Inference of General Gaussian Models on Large Phylogenetic Trees, , , , and . (2020)cite arxiv:2003.10336.