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A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism., , , and . PLoS Comput. Biol., (2016)Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa., , , , , , , , and . BMC Syst. Biol., 12 (1): 66:1-66:10 (2018)Recon3D enables a three-dimensional view of gene variation in human metabolism, , , , , , , , , and 11 other author(s). Nature Biotechnology, (February 2018)Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysis., , , , , , , , and . Proceedings of the National Academy of Sciences of the United States of America, (Dec 20, 2016)Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types., , , , , , and . PLoS Comput. Biol., (2021)Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes., , , , , , and . BMC Bioinform., 21 (1): 162 (2020)iML1515, a knowledgebase that computes Escherichia coli traits, , , , , , , , , and 2 other author(s). Nature Biotechnology, (October 2017)ssbio: a Python framework for structural systems biology., , , , , , , , and . Bioinform., 34 (12): 2155-2157 (2018)A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types., , , , , , , , and . PLoS Comput. Biol., (2019)