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Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

K. Ellrott, M. Bailey, G. Saksena, K. Covington, C. Kandoth, C. Stewart, J. Hess, S. Ma, K. Chiotti, M. McLellan, H. Sofia, C. Hutter, G. Getz, D. Wheeler, L. Ding, S. Caesar-Johnson, J. Demchok, I. Felau, M. Kasapi, M. Ferguson, C. Hutter, H. Sofia, R. Tarnuzzer, Z. Wang, L. Yang, J. Zenklusen, J. Zhang, S. Chudamani, J. Liu, L. Lolla, R. Naresh, T. Pihl, Q. Sun, Y. Wan, Y. Wu, J. Cho, T. DeFreitas, S. Frazer, N. Gehlenborg, G. Getz, D. Heiman, J. Kim, M. Lawrence, P. Lin, S. Meier, M. Noble, G. Saksena, D. Voet, H. Zhang, B. Bernard, N. Chambwe, V. Dhankani, T. Knijnenburg, R. Kramer, K. Leinonen, Y. Liu, M. Miller, S. Reynolds, I. Shmulevich, V. Thorsson, W. Zhang, R. Akbani, B. Broom, A. Hegde, Z. Ju, R. Kanchi, A. Korkut, J. Li, H. Liang, S. Ling, W. Liu, Y. Lu, G. Mills, K. Ng, A. Rao, M. Ryan, J. Wang, J. Weinstein, J. Zhang, A. Abeshouse, J. Armenia, D. Chakravarty, W. Chatila, I. de Bruijn, J. Gao, B. Gross, Z. Heins, R. Kundra, K. La, M. Ladanyi, A. Luna, M. Nissan, A. Ochoa, S. Phillips, E. Reznik, F. Sanchez-Vega, C. Sander, N. Schultz, R. Sheridan, S. Sumer, Y. Sun, B. Taylor, J. Wang, H. Zhang, P. Anur, M. Peto, P. Spellman, C. Benz, J. Stuart, C. Wong, C. Yau, D. Hayes, Parker, M. Wilkerson, A. Ally, M. Balasundaram, R. Bowlby, D. Brooks, R. Carlsen, E. Chuah, N. Dhalla, R. Holt, S. Jones, K. Kasaian, D. Lee, Y. Ma, M. Marra, M. Mayo, R. Moore, A. Mungall, K. Mungall, A. Robertson, S. Sadeghi, J. Schein, P. Sipahimalani, A. Tam, N. Thiessen, K. Tse, T. Wong, A. Berger, R. Beroukhim, A. Cherniack, C. Cibulskis, S. Gabriel, G. Gao, G. Ha, M. Meyerson, S. Schumacher, J. Shih, M. Kucherlapati, R. Kucherlapati, S. Baylin, L. Cope, L. Danilova, M. Bootwalla, P. Lai, D. Maglinte, D. Van Den Berg, D. Weisenberger, J. Auman, S. Balu, T. Bodenheimer, C. Fan, K. Hoadley, A. Hoyle, S. Jefferys, C. Jones, S. Meng, P. Mieczkowski, L. Mose, A. Perou, C. Perou, J. Roach, Y. Shi, J. Simons, T. Skelly, M. Soloway, D. Tan, U. Veluvolu, H. Fan, T. Hinoue, P. Laird, H. Shen, W. Zhou, M. Bellair, K. Chang, K. Covington, C. Creighton, H. Dinh, H. Doddapaneni, L. Donehower, J. Drummond, R. Gibbs, R. Glenn, W. Hale, Y. Han, J. Hu, V. Korchina, S. Lee, L. Lewis, W. Li, X. Liu, M. Morgan, D. Morton, D. Muzny, J. Santibanez, M. Sheth, E. Shinbrot, L. Wang, M. Wang, D. Wheeler, L. Xi, F. Zhao, J. Hess, E. Appelbaum, M. Bailey, M. Cordes, L. Ding, C. Fronick, L. Fulton, R. Fulton, C. Kandoth, E. Mardis, M. McLellan, C. Miller, H. Schmidt, R. Wilson, D. Crain, E. Curley, J. Gardner, K. Lau, D. Mallery, S. Morris, J. Paulauskis, R. Penny, C. Shelton, T. Shelton, M. Sherman, E. Thompson, P. Yena, J. Bowen, J. Gastier-Foster, M. Gerken, K. Leraas, T. Lichtenberg, N. Ramirez, L. Wise, E. Zmuda, N. Corcoran, T. Costello, C. Hovens, A. Carvalho, A. de Carvalho, J. Fregnani, A. Longatto-Filho, R. Reis, C. Scapulatempo-Neto, H. Silveira, D. Vidal, A. Burnette, J. Eschbacher, B. Hermes, A. Noss, R. Singh, M. Anderson, P. Castro, M. Ittmann, D. Huntsman, B. Kohl, X. Le, R. Thorp, C. Andry, E. Duffy, V. Lyadov, O. Paklina, G. Setdikova, A. Shabunin, M. Tavobilov, C. McPherson, R. Warnick, R. Berkowitz, D. Cramer, C. Feltmate, N. Horowitz, A. Kibel, M. Muto, C. Raut, A. Malykh, J. Barnholtz-Sloan, W. Barrett, K. Devine, J. Fulop, Q. Ostrom, K. Shimmel, Y. Wolinsky, A. Sloan, A. De Rose, F. Giuliante, M. Goodman, B. Karlan, C. Hagedorn, J. Eckman, J. Harr, J. Myers, K. Tucker, L. Zach, B. Deyarmin, H. Hu, L. Kvecher, C. Larson, R. Mural, S. Somiari, A. Vicha, T. Zelinka, J. Bennett, M. Iacocca, B. Rabeno, P. Swanson, M. Latour, L. Lacombe, B. Têtu, A. Bergeron, M. McGraw, S. Staugaitis, J. Chabot, H. Hibshoosh, A. Sepulveda, T. Su, T. Wang, O. Potapova, O. Voronina, L. Desjardins, O. Mariani, S. Roman-Roman, X. Sastre, M. Stern, F. Cheng, S. Signoretti, A. Berchuck, D. Bigner, E. Lipp, J. Marks, S. McCall, R. McLendon, A. Secord, A. Sharp, M. Behera, D. Brat, A. Chen, K. Delman, S. Force, F. Khuri, K. Magliocca, S. Maithel, J. Olson, T. Owonikoko, A. Pickens, S. Ramalingam, D. Shin, G. Sica, E. Van Meir, H. Zhang, W. Eijckenboom, A. Gillis, E. Korpershoek, L. Looijenga, W. Oosterhuis, H. Stoop, K. van Kessel, E. Zwarthoff, C. Calatozzolo, L. Cuppini, S. Cuzzubbo, F. DiMeco, G. Finocchiaro, L. Mattei, A. Perin, B. Pollo, C. Chen, J. Houck, P. Lohavanichbutr, A. Hartmann, C. Stoehr, R. Stoehr, H. Taubert, S. Wach, B. Wullich, W. Kycler, D. Murawa, M. Wiznerowicz, K. Chung, W. Edenfield, J. Martin, E. Baudin, G. Bubley, R. Bueno, A. De Rienzo, W. Richards, S. Kalkanis, T. Mikkelsen, H. Noushmehr, L. Scarpace, N. Girard, M. Aymerich, E. Campo, E. Giné, A. Guillermo, N. Van Bang, P. Hanh, B. Phu, Y. Tang, H. Colman, K. Evason, P. Dottino, J. Martignetti, H. Gabra, H. Juhl, T. Akeredolu, S. Stepa, D. Hoon, K. Ahn, K. Kang, F. Beuschlein, A. Breggia, M. Birrer, D. Bell, M. Borad, A. Bryce, E. Castle, V. Chandan, J. Cheville, J. Copland, M. Farnell, T. Flotte, N. Giama, T. Ho, M. Kendrick, J. Kocher, K. Kopp, C. Moser, D. Nagorney, D. O’Brien, B. O’Neill, T. Patel, G. Petersen, F. Que, M. Rivera, L. Roberts, R. Smallridge, T. Smyrk, M. Stanton, R. Thompson, M. Torbenson, J. Yang, L. Zhang, F. Brimo, J. Ajani, A. Angulo Gonzalez, C. Behrens, J. Bondaruk, R. Broaddus, B. Czerniak, B. Esmaeli, J. Fujimoto, J. Gershenwald, C. Guo, A. Lazar, C. Logothetis, F. Meric-Bernstam, C. Moran, L. Ramondetta, D. Rice, A. Sood, P. Tamboli, T. Thompson, P. Troncoso, A. Tsao, I. Wistuba, C. Carter, L. Haydu, P. Hersey, V. Jakrot, H. Kakavand, R. Kefford, K. Lee, G. Long, G. Mann, M. Quinn, R. Saw, R. Scolyer, K. Shannon, A. Spillane, J. Stretch, M. Synott, J. Thompson, J. Wilmott, H. Al-Ahmadie, T. Chan, R. Ghossein, A. Gopalan, D. Levine, V. Reuter, S. Singer, B. Singh, N. Tien, T. Broudy, C. Mirsaidi, P. Nair, P. Drwiega, J. Miller, J. Smith, H. Zaren, J. Park, N. Hung, E. Kebebew, W. Linehan, A. Metwalli, K. Pacak, P. Pinto, M. Schiffman, L. Schmidt, C. Vocke, N. Wentzensen, R. Worrell, H. Yang, M. Moncrieff, C. Goparaju, J. Melamed, H. Pass, N. Botnariuc, I. Caraman, M. Cernat, I. Chemencedji, A. Clipca, S. Doruc, G. Gorincioi, S. Mura, M. Pirtac, I. Stancul, D. Tcaciuc, M. Albert, I. Alexopoulou, A. Arnaout, J. Bartlett, J. Engel, S. Gilbert, J. Parfitt, H. Sekhon, G. Thomas, D. Rassl, R. Rintoul, C. Bifulco, R. Tamakawa, W. Urba, N. Hayward, H. Timmers, A. Antenucci, F. Facciolo, G. Grazi, M. Marino, R. Merola, R. de Krijger, A. Gimenez-Roqueplo, A. Piché, S. Chevalier, G. McKercher, K. Birsoy, G. Barnett, C. Brewer, C. Farver, T. Naska, N. Pennell, D. Raymond, C. Schilero, K. Smolenski, F. Williams, C. Morrison, J. Borgia, M. Liptay, M. Pool, C. Seder, K. Junker, L. Omberg, M. Dinkin, G. Manikhas, D. Alvaro, M. Bragazzi, V. Cardinale, G. Carpino, E. Gaudio, D. Chesla, S. Cottingham, M. Dubina, F. Moiseenko, R. Dhanasekaran, K. Becker, K. Janssen, J. Slotta-Huspenina, M. Abdel-Rahman, D. Aziz, S. Bell, C. Cebulla, A. Davis, R. Duell, J. Elder, J. Hilty, B. Kumar, J. Lang, N. Lehman, R. Mandt, P. Nguyen, R. Pilarski, K. Rai, L. Schoenfield, K. Senecal, P. Wakely, P. Hansen, R. Lechan, J. Powers, A. Tischler, W. Grizzle, K. Sexton, A. Kastl, J. Henderson, S. Porten, J. Waldmann, M. Fassnacht, S. Asa, D. Schadendorf, M. Couce, M. Graefen, H. Huland, G. Sauter, T. Schlomm, R. Simon, P. Tennstedt, O. Olabode, M. Nelson, O. Bathe, P. Carroll, J. Chan, P. Disaia, P. Glenn, R. Kelley, C. Landen, J. Phillips, M. Prados, J. Simko, K. Smith-McCune, S. VandenBerg, K. Roggin, A. Fehrenbach, A. Kendler, S. Sifri, R. Steele, A. Jimeno, F. Carey, I. Forgie, M. Mannelli, M. Carney, B. Hernandez, B. Campos, C. Herold-Mende, C. Jungk, A. Unterberg, A. von Deimling, A. Bossler, J. Galbraith, L. Jacobus, M. Knudson, T. Knutson, D. Ma, M. Milhem, R. Sigmund, A. Godwin, R. Madan, H. Rosenthal, C. Adebamowo, S. Adebamowo, A. Boussioutas, D. Beer, T. Giordano, A. Mes-Masson, F. Saad, T. Bocklage, L. Landrum, R. Mannel, K. Moore, K. Moxley, R. Postier, J. Walker, R. Zuna, M. Feldman, F. Valdivieso, R. Dhir, J. Luketich, E. Mora Pinero, M. Quintero-Aguilo, C. Carlotti, J. Dos Santos, R. Kemp, A. Sankarankuty, D. Tirapelli, J. Catto, K. Agnew, E. Swisher, J. Creaney, B. Robinson, C. Shelley, E. Godwin, S. Kendall, C. Shipman, C. Bradford, T. Carey, A. Haddad, J. Moyer, L. Peterson, M. Prince, L. Rozek, G. Wolf, R. Bowman, K. Fong, I. Yang, R. Korst, W. Rathmell, J. Fantacone-Campbell, J. Hooke, A. Kovatich, C. Shriver, J. DiPersio, B. Drake, R. Govindan, S. Heath, T. Ley, B. Van Tine, P. Westervelt, M. Rubin, J. Lee, N. Aredes, and A. Mariamidze. Cell Systems, 6 (3): 271--281.e7 (March 2018)
DOI: 10.1016/j.cels.2018.03.002

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Andrew J Atkins

J Andrew Doole

Andrew J White

Andrew Singer

Andrew Torda

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Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data.I. Birol, A. Raymond, S. Jackman, S. Pleasance, R. Coope, G. Taylor, M. Yuen, C. Keeling, D. Brand, B. Vandervalk and 14 other author(s). Bioinform., 29 (12): 1492-1497 (2013)Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic PipelinesK. Ellrott, M. Bailey, G. Saksena, K. Covington, C. Kandoth, C. Stewart, J. Hess, S. Ma, K. Chiotti, M. McLellan and 730 other author(s). Cell Systems, 6 (3): 271--281.e7 (March 2018)BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data.K. Chen, J. Wallis, C. Kandoth, J. Kalicki-Veizer, K. Mungall, A. Mungall, S. Jones, M. Marra, T. Ley, E. Mardis and 3 other author(s). Bioinform., 28 (14): 1923-1924 (2012)Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 PatientsA. Kahles, K. Lehmann, N. Toussaint, M. Hüser, S. Stark, T. Sachsenberg, O. Stegle, O. Kohlbacher, C. Sander, S. Caesar-Johnson and 725 other author(s). Cancer Cell, 34 (2): 211--224.e6 (August 2018)Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic PipelinesK. Ellrott, M. Bailey, G. Saksena, K. Covington, C. Kandoth, C. Stewart, J. Hess, S. Ma, K. Chiotti, M. McLellan and 730 other author(s). Cell Systems, 6 (3): 271--281.e7 (March 2018)MAVIS: merging, annotation, validation, and illustration of structural variants.C. Reisle, K. Mungall, C. Choo, D. Paulino, D. Bleile, A. Muhammadzadeh, A. Mungall, R. Moore, I. Shlafman, R. Coope and 3 other author(s). Bioinform., 35 (3): 515-517 (2019)Integrative analysis of 111 reference human epigenomes Open.R. Consortium, A. Kundaje, W. Meuleman, J. Ernst, M. Bilenky, A. Yen, A. Moussavi, P. Kheradpour, Z. Zhang, J. Wang and 86 other author(s). Nat., 518 (7539): 317-330 (2015)

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Disambiguation of "Mungall, Andrew J."

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Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

Please choose a person to relate this publication to

Andrew J Atkins

J Andrew Doole

Andrew J White

Andrew Singer

Andrew Torda

Other publications of authors with the same name

Disambiguation

BibSonomy

Disambiguation of "Mungall, Andrew J."

copydeleteadd this publication to your clipboardcommunity posthistory of this postURLDOIBibTeXEndNoteAPAChicagoDIN 1505HarvardMSOffice XML Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

Please choose a person to relate this publication to

Andrew J Atkins

J Andrew Doole

Andrew J White

Andrew Singer

Andrew Torda

Other publications of authors with the same name

Disambiguation

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history of this post
URL
DOI
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Chicago
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Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines