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A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood

, and . Systematic Biology, (2003)

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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0., , , , , and . Systematic Biology, 59 (3): 307-321 (2010)On the optimization principle in phylogenetic analysis and the minimum-evolution criterion. Molecular Biology and Evolution, (2000)Concerning the NJ algorithm and its unweighted version UNJ. Mathematical Hierarchies and Biology, Am. Math. Society, Providence, USA, (1997)A reduction for approximating a (non-metric) dissimilarity by a tree distance, and . J. of Classification, (1996)Book reviews., , , and . Math. Methods Oper. Res., 40 (1): 120-125 (1994)On the interpretation of Bootstrap trees: appropriate threshold of clade selection and induced gain, and . Molecular Biology and Evolution, (1996)Reconstructing the duplication history of tandemly repeated sequences, , and . Mathematics of evolution and phylogeny, Clarendon press, Oxford, (2005)Strengths and limitations of the minimum evolution principle., , and . Syst Biol, 50 (5): 621--627 (2001)Choosing the tree which actually best explains the data: another look at the bootstrap in phylogenetic reconstruction, , and . Computational Statistics & Data Analysis, 32 (3-4): 273--283 (Jan 28, 2000)Improvement of Distance-Based Phylogenetic Methods by a Local Maximum Likelihood Approach Using Triplets, and . Molecular Biology and Evolution, (2002)