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Using metabolic networks to resolve ecological properties of microbiomes, , , , , and . Current Opinion in Systems Biology, (December 2017)NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways., , , , , , , and . Nucleic Acids Res., 36 (Web-Server-Issue): 444-451 (2008)Prediction of metabolic pathways from genome-scale metabolic networks., , and . Biosyst., 105 (2): 109-121 (2011)A web application for sample size and power calculation in case-control microbiome studies., , , , , , and . Bioinform., 32 (13): 2038-2040 (2016)CoNet app: inference of biological association networks using Cytoscape., and . F1000Research, (2016)Microbial interactions: from networks to models, and . Nat Rev Micro, 10 (8): 538--550 (Aug 16, 2012)Metabolic Pathfinding Using RPAIR Annotation, , and . Journal of Molecular Biology, 388 (2): 390--414 (May 1, 2009)Network Analysis Tools: from biological networks to clusters and pathways, , , , and . Nat. Protocols, 3 (10): 1616--1629 (Sep 18, 2008)Predicting microbial interactions with approaches based on flux balance analysis: an evaluation., , , and . BMC Bioinform., 25 (1): 36 (December 2024)Quantifying the impact of ecological memory on the dynamics of interacting communities., , , , and . PLoS Comput. Biol., (2022)