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ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data., , , , , and . Bioinform., 34 (10): 1697-1704 (2018)LongStitch: high-quality genome assembly correction and scaffolding using long reads., , , , , , and . BMC Bioinform., 22 (3): 534 (2021)GapPredict: A Language Model for Resolving Gaps in Draft Genome Assemblies., , , , and . CoRR, (2021)btllib: A C++ library with Python interface for efficient genomic sequence processing., , , , , , , and . J. Open Source Softw., 7 (79): 4720 (November 2022)RAILS and Cobbler: Scaffolding and automated finishing of draft genomes using long DNA sequences.. J. Open Source Softw., 1 (7): 116 (2016)Profiling model T-cell metagenomes with short reads., , and . Bioinform., 25 (4): 458-464 (2009)Assembling millions of short DNA sequences using SSAKE., , , and . Bioinform., 23 (4): 500-501 (2007)RResolver: efficient short-read repeat resolution within ABySS., , , , , , , and . BMC Bioinform., 23 (1): 246 (2022)ntHash2: recursive spaced seed hashing for nucleotide sequences., , , , , and . Bioinform., 38 (20): 4812-4813 (October 2022)Kollector: transcript-informed, targeted de novo assembly of gene loci., , , , , and . Bioinform., 33 (17): 2789 (2017)