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Recon3D enables a three-dimensional view of gene variation in human metabolism, , , , , , , , , and 11 other author(s). Nature Biotechnology, (February 2018)Characterizing Strain Variation in Engineered E. coli Using a Multi-Omics-Based Workflow., , , , , , , , , and 8 other author(s). Cell systems, 2 (5): 335--346 (May 25, 2016)The Need for Integrated Approaches in Metabolic Engineering., , and . Cold Spring Harbor perspectives in biology, 8 (11): a023903+ (Nov 1, 2016)iML1515, a knowledgebase that computes Escherichia coli traits, , , , , , , , , and 2 other author(s). Nature Biotechnology, (October 2017)ssbio: a Python framework for structural systems biology., , , , , , , , and . Bioinform., 34 (12): 2155-2157 (2018)Model-driven discovery of underground metabolic functions in Escherichia coli, , , , , , , and . Proc. Natl. Acad. Sci., (2015)Model-driven discovery of synergistic inhibitors against E. coli and S. enterica serovar Typhimurium targeting a novel synthetic lethal pair, aldA and prpC., , , , , , , , , and 5 other author(s). Frontiers in microbiology, (2015)Integrating computational methods to retrofit enzymes to synthetic pathways, , , , and . Biotechnol. Bioeng., (2012)A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism., , , and . PLoS Comput. Biol., (2016)