tag :: genomics | BibSonomy

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1WormBase
Contains the genetics, genomics and biology of C. elegans and some related nematodes
8 years ago by @danielle.dennie
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genetics
biology
database
bioinformatics
genomics
worms
geneticsbiologydatabasebioinformaticsgenomicsworms
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1What the FPKM? A review of RNA-Seq expression units
http://haroldpimentel.wordpress.com/2014/05/08/what-the-fpkm-a-review-rna-seq-expression-units/
10 years ago by @gwotto
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RNA-seq
Genomics
RNA-seqGenomics
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1UTRdb
http://utrdb.ba.itb.cnr.it/
14 years ago by @sr320
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database
fish546
bioinformatics
transcriptome
genomics
mirna
analysis
databasefish546bioinformaticstranscriptomegenomicsmirnaanalysis
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1Using functional genomics to explore the effects of ocean acidification on calcifying marine organisms
http://www.int-res.com/articles/theme/m373p219.pdf
15 years ago by @sr320
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paper
fish310
sk
genomics
acidification
shellfish
paperfish310skgenomicsacidificationshellfish
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2UCSC Genome Browser
This site contains the reference sequence and working draft assemblies for a large collection of genomes. Gives annotations, expression, homology and other information on groups of genes and maps your sequence to the genome.
8 years ago by @danielle.dennie
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genetics
biology
bioinformatics
genomics
geneticsbiologybioinformaticsgenomics
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1TheJacksonLaboratory/Computational-Genome-Analysis: Website for Computational Exome and Genome Analysis
Computational-Genome-Analysis - Website for Computational Exome and Genome Analysis
6 years ago by @marcsaric
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software
wes
genomics
sequencing
rna-seq
softwarewesgenomicssequencingrna-seq
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1The use of molecular methods and functional genomics in aquaculture
http://genomics.aquaculture-europe.org/fileadmin/Aquafunc/doc/Journal_issue_Launcher.pdf
16 years ago by @sr320
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paper
bivalve
genomics
oyster
paperbivalvegenomicsoyster
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1The missing graphical user interface for genomics
http://genomebiology.com/2010/11/8/128/abstract
14 years ago by @sr320
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paper
galaxy
software
genomics
ngs
papergalaxysoftwaregenomicsngs
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1The genomeceutical effect of probiotics and their potential role in quenching autoimmune diseases and disorders of inflammation
http://findarticles.com/p/articles/mi_m0ISW/is_250/ai_n6112465/print
17 years ago by @avivagabriel
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probiotics
clinical_nutrition
inflammatory
autoimmune
diseases
nutrients
phytochemicals
interleukins
genomeceuticals
inflammation
micronutrients
nutraceuticals
genomics
cytokines
diet
nutrition
chronic
probioticsclinical_nutritioninflammatoryautoimmunediseasesnutrientsphytochemicalsinterleukinsgenomeceuticalsinflammationmicronutrientsnutraceuticalsgenomicscytokinesdietnutritionchronic
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16the Gene Ontology
http://www.geneontology.org/
16 years ago by @ddella
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science
kontrolliertes_Vokabular
gene
Thesaurus
bioinformatics
genomics
lol
semanticweb
lightweight_ontology
ontology
sciencekontrolliertes_VokabulargeneThesaurusbioinformaticsgenomicslolsemanticweblightweight_ontologyontology
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1The evidence which suggests that this is no naturally evolved virus
https://www.minervanett.no/angus-dalgleish-birger-sorensen-coronavirus/the-evidence-which-suggests-that-this-is-no-naturally-evolved-virus/362529
4 years ago by @fordham1
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bio_engineered
covid-19
genomics
bio_engineeredcovid-19genomics
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1Studying stress responses in the post-genomic era: its ecological and evolutionary role.
http://www.ncbi.nlm.nih.gov/pubmed/17536164
15 years ago by @sr320
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FISH441
paper
stress
sk
genomics
evolution
FISH441paperstressskgenomicsevolution
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1STRING: functional protein association networks
http://string.embl.de/
15 years ago by @sr320
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database
visualization
bioinformatics
datamining
genomics
proteins
interaction
networks
protein-interactions
databasevisualizationbioinformaticsdatamininggenomicsproteinsinteractionnetworksprotein-interactions
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1Stanford Human Genome Diversity Project SNP Genotyping Data
http://hagsc.org/hgdp/files.html
14 years ago by @iblis
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data
genomics
open_access
bioanthropology
datagenomicsopen_accessbioanthropology
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1Software
http://genepath.med.harvard.edu/~reich/Software.htm
14 years ago by @iblis
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open_source
software
genomics
open_sourcesoftwaregenomics
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1Single Cell Genomics Day | Satija Lab
https://satijalab.org/scgd22/
2 years ago by @becker
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workshop
genomics
single
cell
event
workshopgenomicssinglecellevent
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1Sequence conversion
http://www.bugaco.com/converter/biology/sequences/index.php
14 years ago by @sr320
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fish546
file
software
bioinformatics
converter
genomics
ngs
format
convert
tools
fish546filesoftwarebioinformaticsconvertergenomicsngsformatconverttools
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1seqtk
Toolkit for processing sequences in FASTA/Q formats
10 years ago by @gwotto
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genomics
sequencing
genomicssequencing
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1SEQanswers
http://seqanswers.com/
15 years ago by @sr320
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genetics
illumina
solexa
454
bioinformatics
genomics
ngs
sequencing
geneticsilluminasolexa454bioinformaticsgenomicsngssequencing
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1Scopus - Nature Reviews Genetics: Fish as models for environmental genomics
http://www.scopus.com/scopus/record/display.url?eid=2-s2.0-15944388958&view=basic&origin=inward&txGid=p1MWjCz8VRlLplW9tI2aIQx%3a5
16 years ago by @sr320
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environmental
FISH441
paper
fish
genomics
environmentalFISH441paperfishgenomics
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1Xome-Blender: A novel cancer genome simulator
R. Semeraro, V. Orlandini, and A. Magi. PLoS One, (2018)
5 years ago by @marcsaric
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comparison
snp
software
cancer
simulation
SNP-detection
genomics
algorithm-comparison
fulltext
comparisonsnpsoftwarecancersimulationSNP-detectiongenomicsalgorithm-comparisonfulltext
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2VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing.
D. Koboldt, Q. Zhang, D. Larson, D. Shen, M. McLellan, L. Lin, C. Miller, E. Mardis, L. Ding, and R. Wilson. Genome Res, 22 (3): 568--576 (March 2012)
10 years ago by @gwotto
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mutation
bioinformatics
genomics
mutationbioinformaticsgenomics
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1Validation of analytic methods for biomarkers used in drug development
C. Chau, O. Rixe, H. McLeod, and W. Figg. Clin.Cancer Res., 14 (19): 5967-5976 (2008)
14 years ago by @kanefendt
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Human
Antineoplastic
Evaluation
Markers
therapy
Biological
Pharmaceutical
Agents
analysis
drug
Animals
Chemistry
Outcome
Oncology
Biomarkers
Mice
Medical
metabolism
Treatment
Genome
Pharmacological
Humans
methods
Genomics
Neoplasms
Research
Design
pharmacology
Tumor
Preclinical
Drug
HumanAntineoplasticEvaluationMarkerstherapyBiologicalPharmaceuticalAgentsanalysisdrugAnimalsChemistryOutcomeOncologyBiomarkersMiceMedicalmetabolismTreatmentGenomePharmacologicalHumansmethodsGenomicsNeoplasmsResearchDesignpharmacologyTumorPreclinicalDrug
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1Using recursion to compute the inverse of the genomic relationship matrix
I. Misztal, A. Legarra, and I. Aguilar. Journal of Dairy Science, 97 (6): 3943 - 3952 (2014)
8 years ago by @uga.abgg
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2014
genomics
APY
methodology
2014genomicsAPYmethodology
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1Use of genomic recursions and algorithm for proven and young animals for single-step genomic BLUP analyses – a simulation study
B. Fragomeni, D. Lourenco, S. Tsuruta, Y. Masuda, I. Aguilar, and I. Misztal. Journal of Animal Breeding and Genetics, 132 (5): 340--345 (2015)
8 years ago by @uga.abgg
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2015
simulation
genomics
APY
2015simulationgenomicsAPY
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1Unravelling the genome of Holy basil: an âincomparableâ âelixir of lifeâ of traditional Indian medicine
S. Rastogi, A. Kalra, V. Gupta, F. Khan, R. Lal, A. Tripathi, S. Parameswaran, C. Gopalakrishnan, G. Ramaswamy, and A. Shasany. BMC Genomics, 16 (1): 413+ (May 28, 2015)
5 years ago by @karthikraman
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genomics
genomics
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1Unknown-parent groups in single-step genomic evaluation
I. Misztal, Z. Vitezica, A. Legarra, I. Aguilar, and A. Swan. Journal of Animal Breeding and Genetics, 130 (4): 252--258 (2013)
8 years ago by @uga.abgg
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2013
genomics
methodology
2013genomicsmethodology
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2TREC genomics special issue overview
W. Hersh, and E. Voorhees. Information Retrieval, 12 (1): 1--15 (2009)
15 years ago by @huiyangsfsu
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CAT-CONTEST
overview
CAT
CAT-ANNOTATE-TREC
genomics
text
CAT-CONTESToverviewCATCAT-ANNOTATE-TRECgenomicstext
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1Transcriptome-Based Network Analysis Reveals a Spectrum Model of Human Macrophage Activation.
J. Xue, S. Schmidt, J. Sander, A. Draffehn, W. Krebs, I. Quester, D. Nardo, T. Gohel, M. Emde, L. Schmidleithner and 11 other author(s). Immunity, (February 2014)
10 years ago by @gwotto
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genomics
genomics
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1Tick immunobiology.
M. Brossard, and S. Wikel. Parasitology, (2004)
14 years ago by @uvesco
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Host-ParasiteInteractions
Humans
Ticks
Genomics
genetics/immunology
ArachnidVectors
immunology/transmission
Animals
Tick-BorneDiseases
Proteomics
TickInfestations
trends
immunology
Saliva
Host-ParasiteInteractionsHumansTicksGenomicsgenetics/immunologyArachnidVectorsimmunology/transmissionAnimalsTick-BorneDiseasesProteomicsTickInfestationstrendsimmunologySaliva
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1The QTN program and the alleles that matter for evolution: All that's gold does not glitter
M. Rockman. Evolution, (2011)
13 years ago by @peter.ralph
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evolutionary_genetics
genomics
review
infinitesimal_model
evolutionary_geneticsgenomicsreviewinfinitesimal_model
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1The probability of genetic parallelism and convergence in natural populations
G. Conte, M. Arnegard, C. Peichel, and D. Schluter. Proc Biol Sci, (October 2012)
12 years ago by @peter.ralph
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parallel_adaptation
genomics
metastudy
parallel_adaptationgenomicsmetastudy
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1The Plant Mitochondrial Genome: Physical Structure, Information Content, RNA Editing, and Gene Migration to the Nucleus
W. Schuster, and A. Brennicke. Annual Review of Plant Physiology and Plant Molecular Biology, 45 (1): 61-78 (1994)
11 years ago by @drgirasol
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to-download
mitochondria
genomics
plants
to-downloadmitochondriagenomicsplants
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1The patterns and dynamics of genomic instability in metastatic pancreatic cancer
P. Campbell, S. Yachida, L. Mudie, P. Stephens, E. Pleasance, L. Stebbings, L. Morsberger, C. Latimer, S. McLaren, M. Lin and 15 other author(s). Nature, 467 (7319): 1109--1113 (October 2010)
8 years ago by @ytyoun
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nature
cancer
bioinformatics
genomics
naturecancerbioinformaticsgenomics
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1The mutation spectrum revealed by paired genome sequences from a lung cancer patient
W. Lee, Z. Jiang, J. Liu, P. Haverty, Y. Guan, J. Stinson, P. Yue, Y. Zhang, K. Pant, D. Bhatt and 17 other author(s). Nature, 465 (7297): 473--477 (May 2010)
8 years ago by @ytyoun
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cancer
bioinformatics
genomics
cancerbioinformaticsgenomics
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2The molecular population genetics of regulatory genes
M. Purugganan. Molecular Ecology, 9 (10): 1451--1461 (2000)
6 years ago by @robin.garcia
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genomics
population
genomicspopulation
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1The genomics of land plant chloroplasts: Gene content and alteration of genomic information by RNA editing
T. Wakasugi, T. Tsudzuki, and M. Sugiura. Photosynthesis Research, 70 (1): 107-118 (2001)
11 years ago by @drgirasol
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plastid
plant
genomics
land
plastidplantgenomicsland
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1The genomic complexity of primary human prostate cancer
M. Berger, M. Lawrence, F. Demichelis, Y. Drier, K. Cibulskis, A. Sivachenko, A. Sboner, R. Esgueva, D. Pflueger, C. Sougnez and 31 other author(s). Nature, 470 (7333): 214--220 (February 2011)
8 years ago by @ytyoun
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nature
cancer
bioinformatics
genomics
prostate
naturecancerbioinformaticsgenomicsprostate
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1The emergence of translational epidemiology: from scientific discovery to population health impact.
M. Khoury, M. Gwinn, and J. Ioannidis. American journal of epidemiology, 172 (5): 517-24 (September 2010)5712<m:linebreak></m:linebreak>JID: 7910653; CIN: Am J Epidemiol. 2010 Sep 1;172(5):525-7; discussion 528-9. PMID: 20688901; OID: NLM: PMC2927741; 2010/08/05 aheadofprint; ppublish;.
a year ago by @jepcastel
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DiffusionofInnovation
Genomics:organization&administration
Humans
Epidemiology:organization&administration
TranslationalMedicalResearch
Genomics
PublicHealth
Epidemiology
TranslationalMedicalResearch:organization&adm
DiffusionofInnovationGenomics:organization&administrationHumansEpidemiology:organization&administrationTranslationalMedicalResearchGenomicsPublicHealthEpidemiologyTranslationalMedicalResearch:organization&adm
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1The Dimensionality of Genomic Information and Its Effect on Genomic Prediction
I. Pocrnic, D. Lourenco, Y. Masuda, A. Legarra, and I. Misztal. Genetics, 203 (1): 573--581 (March 2016)
8 years ago by @uga.abgg
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2016
simulation
genomics
methodology
2016simulationgenomicsmethodology
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