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1Analysis of 450k data using minfi
https://www.bioconductor.org/help/course-materials/2015/BioC2015/methylation450k.html
6 years ago by @marcsaric
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fulltext
illumina
methylation
microarray
minfi
r-language
software
tutorial
fulltextilluminamethylationmicroarrayminfir-languagesoftwaretutorial
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1Methylation Array Data Processing
A slidedeck from the University of Bristol on Methlyation array QC. Somewhat older but including a few interesting starting points.
6 years ago by @marcsaric
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SHOULDREAD
fulltext
methylation
microarray
quality-control
SHOULDREADfulltextmethylationmicroarrayquality-control
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1DNA methylation signatures analysis with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip : Protocol Exchange
This protocol provides detailed instructions on Quality Control, EWAS, and CpG island signature discovery with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip data. R package minfi and caret was used in this analysis.
6 years ago by @marcsaric
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MUSTREAD
epic
fulltext
illumina
methods
methylation
microarray
quality-control
r-language
MUSTREADepicfulltextilluminamethodsmethylationmicroarrayquality-controlr-language
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1MNP - Welcome
https://www.molecularneuropathology.org/mnp
6 years ago by @marcsaric
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MUSTREAD
cancer-research
classification
dkfz
epic
methylation
microarray
services
MUSTREADcancer-researchclassificationdkfzepicmethylationmicroarrayservices
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1minfi - Week Four | Coursera
Video created by Johns Hopkins University for the course "Bioconductor for Genomic Data Science". In this week, we will cover Getting data in Bioconductor, Rsamtools, oligo, limma, and minfi Learn online and earn valuable credentials from top ...
6 years ago by @marcsaric
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SHOULDREAD
fulltext
methylation
microarray
minfi
tutorial
SHOULDREADfulltextmethylationmicroarrayminfitutorial
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1A Patient-Centric Methylation Pipeline - f6cd437c9ba624976e2b5f0958b040d14b66.pdf
https://pdfs.semanticscholar.org/829b/f6cd437c9ba624976e2b5f0958b040d14b66.pdf
6 years ago by @marcsaric
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SHOULDREAD
fulltext
illumina
methylation
microarray
single-sample
technical_report
SHOULDREADfulltextilluminamethylationmicroarraysingle-sampletechnical_report
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1GenomeStudio Software
Visualize and analyze data generated on Illumina microarray platforms with GenomeStudio data analysis software.
6 years ago by @marcsaric
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PAYWALL
methylation
microarray
software
PAYWALLmethylationmicroarraysoftware
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1The Chip Analysis Methylation Pipeline
https://www.bioconductor.org/packages/devel/bioc/vignettes/ChAMP/inst/doc/ChAMP.html
6 years ago by @marcsaric
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MUSTREAD
methylation
microarray
pipeline
quality-control
r-language
software
MUSTREADmethylationmicroarraypipelinequality-controlr-languagesoftware
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1DNA methylation signatures analysis with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip : Protocol Exchange
This protocol provides detailed instructions on Quality Control, EWAS, and CpG island signature discovery with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip data. R package minfi and caret was used in this analysis.
6 years ago by @marcsaric
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MUSTREAD
fulltext
methylation
microarray
paper
protocols
quality-control
software
MUSTREADfulltextmethylationmicroarraypaperprotocolsquality-controlsoftware
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1Infinium Human Methylation 450K BeadChip Support
Infinium HumanMethylation450K BeadChip
7 years ago by @marcsaric
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illumina
methylation
microarray
illuminamethylationmicroarray
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1Polymer microarray technology for stem cell engineering
http://www.sciencedirect.com/science/article/pii/S1742706115301604#f0045
7 years ago by @bkoch
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biomaterial
microarray
nextgen
polymer
review
biomaterialmicroarraynextgenpolymerreview
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1Molecular taxonomy of major neuronal classes in the adult mouse forebrain - Nature Neuroscience
http://www.nature.com/neuro/journal/v9/n1/full/nn1618.html
7 years ago by @bshanks
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Bookmarks
Bookmarks_Menu
cortex
work
microarray
celltype
BookmarksBookmarks_Menucortexworkmicroarraycelltype
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1Polymer Microarrays for High Throughput Discovery of Biomaterials | Protocol
A description of the formation of a polymer microarray using an on-chip photopolymerization technique.
8 years ago by @bkoch
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biomaterial
fabrication
methods
microarray
nextgen
screening
biomaterialfabricationmethodsmicroarraynextgenscreening
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1Shared Resources-Genomics FHCRC
http://www.fhcrc.org/science/shared_resources/genomics/index.html
14 years ago by @sr320
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UW
core
microarray
sequencing
UWcoremicroarraysequencing
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1Geochip
http://vimss.lbl.gov/publicfiles/N178_He.pdf
14 years ago by @sr320
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bio533
microarray
microbial
bio533microarraymicrobial
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2geWorkbench
http://wiki.c2b2.columbia.edu/workbench/index.php/Home
14 years ago by @sr320
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bioinformatics
datamining
expression
genes
genomics
microarray
ngs
pathway
pathways
software
systemsbiology
visualization
wiki
bioinformaticsdataminingexpressiongenesgenomicsmicroarrayngspathwaypathwayssoftwaresystemsbiologyvisualizationwiki
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1Transcriptome profiling of selectively bred Pacifi... [Mar Biotechnol (NY). 2009 Sep-Oct] - PubMed result
http://www.ncbi.nlm.nih.gov/pubmed/19205802
14 years ago by @sr320
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cm
hsp
microarray
oyster
paper
cmhspmicroarrayoysterpaper
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1Starvation alters the liver transcriptome of the innate immune response in Atlantic salmon (Salmo salar)
http://www.biomedcentral.com/1471-2164/11/418
14 years ago by @sr320
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fish441
immune
innate
liver
microarray
paper
salmon
fish441immuneinnatelivermicroarraypapersalmon
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1PLoS Genetics: A Microarray-Based Genetic Screen for Yeast Chronological Aging Factors
http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000921
14 years ago by @sr320
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aging
microarray
paper
senescence
agingmicroarraypapersenescence
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1MIAME 2.0 - MIAME - MGED
6 Kriterien für die Durchführung von Microarray-Experimenten
14 years ago by @goodminton
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microarray
standard
microarraystandard
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publications (hide)133
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1Tubular gel fabrication and cell encapsulation in laminar flow stream formed by microfabricated nozzle array.
S. Sugiura, T. Oda, Y. Aoyagi, M. Satake, N. Ohkohchi, and M. Nakajima. Lab Chip, 8 (8): 1255--1257 (August 2008)
13 years ago by @pawelsikorski
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Acid,
Acids,
Alginates,
Analysis,
Electron,
Gels,
Glucuronic
Hexuronic
Microarray
Microscopy,
Polylysine,
Scanning;
chemistry
chemistry/ultrastructure;
chemistry;
instrumentation/methods;
Acid,Acids,Alginates,Analysis,Electron,Gels,GlucuronicHexuronicMicroarrayMicroscopy,Polylysine,Scanning;chemistrychemistry/ultrastructure;chemistry;instrumentation/methods;
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2Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata
J. Faith, M. Driscoll, V. Fusaro, E. Cosgrove, B. Hayete, F. Juhn, S. Schneider, and T. Gardner. Nucleic Acids Research, 36 (Database issue): D866-D870 (2008)
13 years ago by @lantiq
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microarray
database
microarraydatabase
(0)
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1Evaluating microarray-based classifiers: an overview
A. Boulesteix, C. Strobl, T. Augustin, and M. Daumer. Cancer Inform, (2008)
13 years ago by @vivion
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classification
classifiers
discriminant
discriminant-analysis
high-dimensional
high-dimensional-data
microarray
classificationclassifiersdiscriminantdiscriminant-analysishigh-dimensionalhigh-dimensional-datamicroarray
(0)
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2Semantic Relations for Interpreting DNA Microarray Data
D. Hristovski, A. Kastrin, B. Peterlin, and T. Rindflesch. AMIA Annu Symp Proc., (2009)
14 years ago by @huiyangsfsu
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CAT
CAT-REL-NLP
DNA
microarray
relations
semantic
CATCAT-REL-NLPDNAmicroarrayrelationssemantic
(0)
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2R/BHC: fast Bayesian hierarchical clustering for microarray data
R. Savage, K. Heller, Y. Xu, Z. Ghahramani, W. Truman, M. Grant, K. Denby, and D. Wild. BMC Bioinformatics, 10 (1): 242 (2009)
14 years ago by @wnpxrz
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bayesian
clustering
microarray
bayesianclusteringmicroarray
(0)
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1Molecular Interferometric Imaging for Biosensor Applications
M. Zhao, X. Wang, G. Lawrence, P. Espinoza, and D. Nolte. (2007)
15 years ago by @photonics
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Biomedical
biosensor
immunoassay
interferometry
label-free
microarray
optics
protein
Biomedicalbiosensorimmunoassayinterferometrylabel-freemicroarrayopticsprotein
(0)
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1Matrix factorization for recovery of biological processes from microarray data
A. Kossenkov, and M. Ochs. Methods Enzymol, (2009)
15 years ago by @wnpxrz
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factorization
imported
matrix
microarray
factorizationimportedmatrixmicroarray
(0)
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2ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization
E. Glaab, J. Garibaldi, and N. Krasnogor. BMC Bioinformatics, 10 (1): 358 (2009)
15 years ago by @wnpxrz
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imported
microarray
online
proj:0915
service
software
web
importedmicroarrayonlineproj:0915servicesoftwareweb
(0)
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1Multiple significance tests: the Bonferroni method.
J. Bland, and D. Altman. BMJ, 310 (6973): 170 (January 1995)
15 years ago by @kcha193
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microarray
microarray
(0)
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1A Hierarchical Naive Bayes Model for handling sample heterogeneity in classification problems: an application to tissue microarrays
F. Demichelis, P. Magni, P. Piergiorgi, M. Rubin, and R. Bellazzi. BMC Bioinformatics, (November 2006)
15 years ago by @ytyoun
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classifier
machine_learning
microarray
naive_bayes
classifiermachine_learningmicroarraynaive_bayes
(0)
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3Multiple significance tests: the Bonferroni method.
J. Bland, and D. Altman. BMJ, 310 (6973): 170 (January 1995)
15 years ago by @kcha193
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microarray
microarray
(0)
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2XMAS: An Experiential Approach for Visualization, Analysis, and Exploration of Time Series Microarray Data
B. Dalziel, H. Yang, R. Singh, M. Gormley, and S. Fisher. Bioinformatics Research Development (BIRD), (2008)
15 years ago by @huiyangsfsu
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CAT
CAT-VIZ
analysis
data
microarray
series
time
CATCAT-VIZanalysisdatamicroarrayseriestime
(0)
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1A microarray data analysis framework for postmortem tissues
E. Jackson, M. Wayland, W. Fitzgerald, and S. Bahn. Methods, 37 (3): 247-260 (November 2005)
16 years ago by @ben8bibsonomy
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microarray
microarray
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1Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae
M. Piper, P. Daran-Lapujade, C. Bro, B. Regenberg, S. Knudsen, J. Nielsen, and J. Pronk. J Biol Chem, 277 (40): 37001-37008 (October 2002)
16 years ago by @ben8bibsonomy
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microarray
microarray
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2Genesis: cluster analysis of microarray data
A. Sturn, J. Quackenbush, and Z. Trajanoski. Bioinformatics, 18 (1): 207-208 (January 2002)
16 years ago by @ben8bibsonomy
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microarray
microarray
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2Network structures and algorithms in Bioconductor
V. Carey, J. Gentry, E. Whalen, and R. Gentleman. Bioinformatics, 21 (1): 135-136 (January 2005)
16 years ago by @ben8bibsonomy
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microarray
microarray
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8Cluster analysis and display of genome-wide expression patterns
M. Eisen, P. Spellman, P. Brown, and D. Botstein. Proc Natl Acad Sci U S A, 95 (25): 14863-14868 (December 1998)
16 years ago by @ben8bibsonomy
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microarray
microarray
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1Bootstrapping cluster analysis: assessing the reliability of conclusions from microarray experiments
M. Kerr, and G. Churchill. Proc Natl Acad Sci U S A, 98 (16): 8961-8965 (July 2001)
16 years ago by @ben8bibsonomy
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microarray
microarray
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1A microarray analysis for differential gene expression in the soybean genome using Bioconductor and R
W. Alvord, J. Roayaei, O. Quiñones, and K. Schneider. Brief Bioinform, 8 (6): 415-431 (November 2007)
16 years ago by @ben8bibsonomy
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microarray
microarray
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1Computational discovery of gene modules and regulatory networks.
Z. Bar-Joseph, G. Gerber, T. Lee, N. Rinaldi, J. Yoo, F. Robert, D. Gordon, E. Fraenkel, T. Jaakkola, R. Young and 1 other author(s). Nat Biotechnol, 21 (11): 1337--1342 (November 2003)
16 years ago by @cabird
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biclustering
classification
dataset
gene
microarray
network
plasticity
thesis
biclusteringclassificationdatasetgenemicroarraynetworkplasticitythesis
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