In this post I will demonstrate SimpleITK, an abstraction layer over the ITK library, to segment/label the white and gray matter from an MRI dataset. I will start with an intro on what SimpleITK is, what it can do, and how to install it. The tutorial will include loading a DICOM file-series, image smoothing/denoising, region-growing…
A. Kirschenbaum. Proceedings of the 16th International Conference for Computational Linguistics and Intelligent Text Processing (CICLING 2015), Part I, volume 9041 of Lecture Notes in Computer Science, page 139--150. Springer, (2015)