%0 Journal Article %1 posada_jmodeltest:_2008 %A Posada, David %D 2008 %J Mol Biol Evol %K imported %N 7 %P 1253--1256 %R 10.1093/molbev/msn083 %T jModelTest: Phylogenetic Model Averaging %V 25 %X jModelTest is a new program for the statistical selection of models of nucleotide substitution based on "Phyml" (Guindon and Gascuel 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704.). It implements 5 different selection strategies, including "hierarchical and dynamical likelihood ratio tests," the Äkaike information criterion," the "Bayesian information criterion," and a "decision-theoretic performance-based" approach. This program also calculates the relative importance and model-averaged estimates of substitution parameters, including a model-averaged estimate of the phylogeny. jModelTest is written in Java and runs under Mac OSX, Windows, and Unix systems with a Java Runtime Environment installed. The program, including documentation, can be freely downloaded from the software section at http://darwin.uvigo.es.

@article{posada_jmodeltest:_2008, abstract = {{jModelTest} is a new program for the statistical selection of models of nucleotide substitution based on {"Phyml"} {(Guindon} and Gascuel 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704.). It implements 5 different selection strategies, including "hierarchical and dynamical likelihood ratio tests," the {"Akaike} information criterion," the {"Bayesian} information criterion," and a "decision-theoretic performance-based" approach. This program also calculates the relative importance and model-averaged estimates of substitution parameters, including a model-averaged estimate of the phylogeny. {jModelTest} is written in Java and runs under Mac {OSX,} Windows, and Unix systems with a Java Runtime Environment installed. The program, including documentation, can be freely downloaded from the software section at http://darwin.uvigo.es.}, added-at = {2009-12-09T17:59:08.000+0100}, author = {Posada, David}, biburl = {https://www.bibsonomy.org/bibtex/2c1bf61e4a3fda9b94914281fc480c7e4/derele}, description = {my big master bibtex file}, doi = {10.1093/molbev/msn083}, interhash = {bcc85eebcdac56e5822a0d47507e77ac}, intrahash = {c1bf61e4a3fda9b94914281fc480c7e4}, journal = {Mol Biol Evol}, keywords = {imported}, month = {July}, number = 7, opturl = {http://mbe.oxfordjournals.org/cgi/content/abstract/25/7/1253}, pages = {1253--1256}, timestamp = {2009-12-09T18:00:10.000+0100}, title = {{jModelTest:} Phylogenetic Model Averaging}, volume = 25, year = 2008 }