%0 Journal Article %1 10.4137/EBO.S18980 %A Pervez, Muhammad Tariq %A Babar, Masroor Ellahi %A Nadeem, Asif %A Aslam, Naeem %A Naveed, Nasir %A Ahmad, Sarfraz %A Muhammad, Shah %A Qadri, Salman %A Shahid, Muhammad %A Hussain, Tanveer %A Javed, Maryam %D 2015 %I Libertas Academica %J Evolutionary Bioinformatics %K myown %P 35--42 %R 10.4137/EBO.S18980 %T IVisTMSA: Interactive Visual Tools for Multiple Sequence Alignments %U /brokenurl#www.la-press.com/ivistmsa-interactive-visual-tools-for-multiple-sequence-alignments-article-a4720 %V 11 %X IVisTMSA is a software package of seven graphical tools for multiple sequence alignments. MSApad is an editing and analysis tool. It can load 409% more data than Jalview, STRAP, CINEMA, and Base-by-Base. MSA comparator allows the user to visualize consistent and inconsistent regions of reference and test alignments of more than 21-MB size in less than 12 seconds. MSA comparator is 5,200% efficient and more than 40% efficient as compared to BALiBASE c program and FastSP, respectively. MSA reconstruction tool provides graphical user interfaces for four popular aligners and allows the user to load several sequence files at a time. FASTA generator converts seven formats of alignments of unlimited size into FASTA format in a few seconds. MSA ID calculator calculates identity matrix of more than 11,000 sequences with a sequence length of 2,696 base pairs in less than 100 seconds. Tree and Distance Matrix calculation tools generate phylogenetic tree and distance matrix, respectively, using neighbor joining% identity and BLOSUM 62 matrix.

@article{10.4137/EBO.S18980, abstract = { IVisTMSA is a software package of seven graphical tools for multiple sequence alignments. MSApad is an editing and analysis tool. It can load 409% more data than Jalview, STRAP, CINEMA, and Base-by-Base. MSA comparator allows the user to visualize consistent and inconsistent regions of reference and test alignments of more than 21-MB size in less than 12 seconds. MSA comparator is 5,200% efficient and more than 40% efficient as compared to BALiBASE c program and FastSP, respectively. MSA reconstruction tool provides graphical user interfaces for four popular aligners and allows the user to load several sequence files at a time. FASTA generator converts seven formats of alignments of unlimited size into FASTA format in a few seconds. MSA ID calculator calculates identity matrix of more than 11,000 sequences with a sequence length of 2,696 base pairs in less than 100 seconds. Tree and Distance Matrix calculation tools generate phylogenetic tree and distance matrix, respectively, using neighbor joining% identity and BLOSUM 62 matrix. }, added-at = {2015-03-13T04:30:37.000+0100}, author = {Pervez, Muhammad Tariq and Babar, Masroor Ellahi and Nadeem, Asif and Aslam, Naeem and Naveed, Nasir and Ahmad, Sarfraz and Muhammad, Shah and Qadri, Salman and Shahid, Muhammad and Hussain, Tanveer and Javed, Maryam}, biburl = {https://www.bibsonomy.org/bibtex/2eb8e49df5c23fcff5e490a308daabbb6/nasir.naveed}, doi = {10.4137/EBO.S18980}, interhash = {1e9644dd222f835c577f20517ffd8c3e}, intrahash = {eb8e49df5c23fcff5e490a308daabbb6}, journal = {Evolutionary Bioinformatics}, keywords = {myown}, month = {03}, pages = {35--42}, publisher = {Libertas Academica}, timestamp = {2015-03-24T16:59:50.000+0100}, title = {IVisTMSA: Interactive Visual Tools for Multiple Sequence Alignments}, url = {/brokenurl#www.la-press.com/ivistmsa-interactive-visual-tools-for-multiple-sequence-alignments-article-a4720}, volume = 11, year = 2015 }