%0 Journal Article %1 wiley2008 %A Li, Hong %A Cao, Yang %A Petzold, Linda R. %A Gillespie, Daniel T. %C Department of Computer Science, University of California Santa Barbara, Santa Barbara, California 93106; Department of Computer Science, Virginia Tech, Blacksburg, Virginia 24061; Dan T. Gillespie Consulting, 30504 Cordoba Place, Castaic, California 91384 %D 2008 %I Copyright © 2008 American Institute of Chemical Engineers (AIChE) %J Biotechnology Progress %K algorithms gillespie parallel_processing simulations ssa stochastic_simulation_algorithm %N 1 %P 56-61 %R 10.1021/bp070255h %T Algorithms and Software for Stochastic Simulation of Biochemical Reacting Systems %U http://dx.doi.org/10.1021/bp070255h %V 24 %X Traditional deterministic approaches for simulation of chemically reacting systems fail to capture the randomness inherent in such systems at scales common in intracellular biochemical processes. In this manuscript, we briefly review the state of the art in discrete stochastic and multiscale algorithms for simulation of biochemical systems and we present the StochKit software toolkit.

@article{wiley2008, abstract = {Traditional deterministic approaches for simulation of chemically reacting systems fail to capture the randomness inherent in such systems at scales common in intracellular biochemical processes. In this manuscript, we briefly review the state of the art in discrete stochastic and multiscale algorithms for simulation of biochemical systems and we present the StochKit software toolkit.}, added-at = {2009-05-20T01:08:36.000+0200}, address = {Department of Computer Science, University of California Santa Barbara, Santa Barbara, California 93106; Department of Computer Science, Virginia Tech, Blacksburg, Virginia 24061; Dan T. Gillespie Consulting, 30504 Cordoba Place, Castaic, California 91384}, author = {Li, Hong and Cao, Yang and Petzold, Linda R. and Gillespie, Daniel T.}, biburl = {https://www.bibsonomy.org/bibtex/2220ce4ba3e77c653165dd28b9f6a4d3d/sidney}, description = {Wiley InterScience :: JOURNALS :: Biotechnology Progress}, doi = {10.1021/bp070255h}, interhash = {e8bcaf68c64bad5a533ecb2d50ee64a3}, intrahash = {220ce4ba3e77c653165dd28b9f6a4d3d}, journal = {Biotechnology Progress}, keywords = {algorithms gillespie parallel_processing simulations ssa stochastic_simulation_algorithm}, number = 1, pages = {56-61}, publisher = {Copyright © 2008 American Institute of Chemical Engineers (AIChE)}, timestamp = {2009-05-20T01:08:36.000+0200}, title = {Algorithms and Software for Stochastic Simulation of Biochemical Reacting Systems}, url = {http://dx.doi.org/10.1021/bp070255h}, volume = 24, year = 2008 }