OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of
high-quality custom graphical maps of plastid and mitochondrial genomes
M. Lohse, O. Drechsel, and R. Bock. Curr Genet, 52 (5-6):
267-74(November 2007)Lohse, Marc Drechsel, Oliver Bock, Ralph Research Support, Non-U.S.
Gov't United States Current genetics Curr Genet. 2007 Nov;52(5-6):267-74.
Epub 2007 Oct 24..
Abstract
Mitochondria and plastids are DNA-containing cell organelles whose
genomes occur at high copy numbers per cell. Organellar genomes vary
greatly in size ranging from approximately 15 kb for some animal
mitochondrial genomes to more than 2 Mb for some plant mitochondrial
genomes. The vast majority of organellar genomes map as circular
molecules that are difficult to illustrate by available commercial
or free software tools. Thus, published genome maps are extremely
heterogeneous in design, often tediously drawn semi-manually and
lack any consensus in display. Here, we present a new web-based tool,
OrganellarGenomeDRAW (OGDRAW), which produces high-resolution custom
graphical maps of DNA sequences as stored in standard GenBank format
entries. GenBank data can be provided as either file uploads or accession
numbers. The program is specially optimized for the display of chloroplast
and mitochondrial genomes but can also be used to depict other circular
DNA sequences. The design of the program core as a Perl module with
an object-oriented interface allows easy integration into custom
scripts.
Lohse, Marc Drechsel, Oliver Bock, Ralph Research Support, Non-U.S.
Gov't United States Current genetics Curr Genet. 2007 Nov;52(5-6):267-74.
Epub 2007 Oct 24.
%0 Journal Article
%1 Lohse2007
%A Lohse, M.
%A Drechsel, O.
%A Bock, R.
%D 2007
%J Curr Genet
%K *Computer *Software Chromosome Genetic Genome, Graphics Mapping Mitochondria/*genetics Mitochondrial/*genetics Models, Plastid/*genetics Plastids/*genetics
%N 5-6
%P 267-74
%T OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of
high-quality custom graphical maps of plastid and mitochondrial genomes
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17957369
%V 52
%X Mitochondria and plastids are DNA-containing cell organelles whose
genomes occur at high copy numbers per cell. Organellar genomes vary
greatly in size ranging from approximately 15 kb for some animal
mitochondrial genomes to more than 2 Mb for some plant mitochondrial
genomes. The vast majority of organellar genomes map as circular
molecules that are difficult to illustrate by available commercial
or free software tools. Thus, published genome maps are extremely
heterogeneous in design, often tediously drawn semi-manually and
lack any consensus in display. Here, we present a new web-based tool,
OrganellarGenomeDRAW (OGDRAW), which produces high-resolution custom
graphical maps of DNA sequences as stored in standard GenBank format
entries. GenBank data can be provided as either file uploads or accession
numbers. The program is specially optimized for the display of chloroplast
and mitochondrial genomes but can also be used to depict other circular
DNA sequences. The design of the program core as a Perl module with
an object-oriented interface allows easy integration into custom
scripts.
@article{Lohse2007,
abstract = {Mitochondria and plastids are DNA-containing cell organelles whose
genomes occur at high copy numbers per cell. Organellar genomes vary
greatly in size ranging from approximately 15 kb for some animal
mitochondrial genomes to more than 2 Mb for some plant mitochondrial
genomes. The vast majority of organellar genomes map as circular
molecules that are difficult to illustrate by available commercial
or free software tools. Thus, published genome maps are extremely
heterogeneous in design, often tediously drawn semi-manually and
lack any consensus in display. Here, we present a new web-based tool,
OrganellarGenomeDRAW (OGDRAW), which produces high-resolution custom
graphical maps of DNA sequences as stored in standard GenBank format
entries. GenBank data can be provided as either file uploads or accession
numbers. The program is specially optimized for the display of chloroplast
and mitochondrial genomes but can also be used to depict other circular
DNA sequences. The design of the program core as a Perl module with
an object-oriented interface allows easy integration into custom
scripts.},
added-at = {2010-12-14T18:12:02.000+0100},
author = {Lohse, M. and Drechsel, O. and Bock, R.},
biburl = {https://www.bibsonomy.org/bibtex/23c81d70b2caf20da5d5df22ee3bfdc49/pharmawuerz},
endnotereftype = {Journal Article},
interhash = {b1d22956520f28ec684b7de7f0407177},
intrahash = {3c81d70b2caf20da5d5df22ee3bfdc49},
issn = {0172-8083 (Print) 0172-8083 (Linking)},
journal = {Curr Genet},
keywords = {*Computer *Software Chromosome Genetic Genome, Graphics Mapping Mitochondria/*genetics Mitochondrial/*genetics Models, Plastid/*genetics Plastids/*genetics},
month = Nov,
note = {Lohse, Marc Drechsel, Oliver Bock, Ralph Research Support, Non-U.S.
Gov't United States Current genetics Curr Genet. 2007 Nov;52(5-6):267-74.
Epub 2007 Oct 24.},
number = {5-6},
pages = {267-74},
shorttitle = {OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality
custom graphical maps of plastid and mitochondrial genomes},
timestamp = {2010-12-14T18:12:20.000+0100},
title = {OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of
high-quality custom graphical maps of plastid and mitochondrial genomes},
url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17957369},
volume = 52,
year = 2007
}