A formalin-fixed paraffin-embedded (FFPE) sample usually yields highly degraded DNA, which limits the use of techniques requiring high-quality DNA, such as Infinium Methylation microarrays. To overcome this restriction, we have applied an FFPE restoration procedure consisting of DNA repair and ligation processes in a set of paired fresh-frozen (FF) and FFPE samples. We validated the FFPE results in comparison with matched FF samples, enabling us to use FFPE samples on the Infinium HumanMethylation450 Methylation array.
Description
Validation of DNA methylation profiling in formalin-fixed paraffin-embedded samples using the Infinium HumanMethylation450 Microarray
%0 Journal Article
%1 Moran:2014:Epigenetics:24732293
%A Moran, S
%A Vizoso, M
%A Martinez-Cardús, A
%A Gomez, A
%A Matías-Guiu, X
%A Chiavenna, S M
%A Fernandez, A G
%A Esteller, M
%D 2014
%J Epigenetics
%K FFPE fulltext microarray
%N 6
%P 829-833
%R 10.4161/epi.28790
%T Validation of DNA methylation profiling in formalin-fixed paraffin-embedded samples using the Infinium HumanMethylation450 Microarray
%U https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4065180/
%V 9
%X A formalin-fixed paraffin-embedded (FFPE) sample usually yields highly degraded DNA, which limits the use of techniques requiring high-quality DNA, such as Infinium Methylation microarrays. To overcome this restriction, we have applied an FFPE restoration procedure consisting of DNA repair and ligation processes in a set of paired fresh-frozen (FF) and FFPE samples. We validated the FFPE results in comparison with matched FF samples, enabling us to use FFPE samples on the Infinium HumanMethylation450 Methylation array.
@article{Moran:2014:Epigenetics:24732293,
abstract = {A formalin-fixed paraffin-embedded (FFPE) sample usually yields highly degraded DNA, which limits the use of techniques requiring high-quality DNA, such as Infinium Methylation microarrays. To overcome this restriction, we have applied an FFPE restoration procedure consisting of DNA repair and ligation processes in a set of paired fresh-frozen (FF) and FFPE samples. We validated the FFPE results in comparison with matched FF samples, enabling us to use FFPE samples on the Infinium HumanMethylation450 Methylation array.},
added-at = {2017-06-06T19:21:02.000+0200},
author = {Moran, S and Vizoso, M and Martinez-Card{\'u}s, A and Gomez, A and Mat{\'i}as-Guiu, X and Chiavenna, S M and Fernandez, A G and Esteller, M},
biburl = {https://www.bibsonomy.org/bibtex/2d6b3264178c9f31eab633d1464f6a422/marcsaric},
description = {Validation of DNA methylation profiling in formalin-fixed paraffin-embedded samples using the Infinium HumanMethylation450 Microarray},
doi = {10.4161/epi.28790},
interhash = {a5afecb8743d2a4ca588037642cd9dd3},
intrahash = {d6b3264178c9f31eab633d1464f6a422},
journal = {Epigenetics},
keywords = {FFPE fulltext microarray},
month = jun,
number = 6,
pages = {829-833},
pmid = {24732293},
timestamp = {2017-11-06T17:22:50.000+0100},
title = {Validation of DNA methylation profiling in formalin-fixed paraffin-embedded samples using the Infinium HumanMethylation450 Microarray},
url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4065180/},
volume = 9,
year = 2014
}