%0 Journal Article %1 Tian:2017:Bioinformatics:28961746 %A Tian, Y %A Morris, T J %A Webster, A P %A Yang, Z %A Beck, S %A Feber, A %A Teschendorff, A E %D 2017 %J Bioinformatics %K MUSTREAD methylation microarray pipeline quality-control r-language %N 24 %P 3982-3984 %R 10.1093/bioinformatics/btx513 %T ChAMP: updated methylation analysis pipeline for Illumina BeadChips %U https://www.ncbi.nlm.nih.gov/pubmed/28961746 %V 33 %X The Illumina Infinium HumanMethylationEPIC BeadChip is the new platform for high-throughput DNA methylation analysis, effectively doubling the coverage compared to the older 450 K array. Here we present a significantly updated and improved version of the Bioconductor package ChAMP, which can be used to analyze EPIC and 450k data. Many enhanced functionalities have been added, including correction for cell-type heterogeneity, network analysis and a series of interactive graphical user interfaces.ChAMP is a BioC package available from https://bioconductor.org/packages/release/bioc/html/ChAMP.html.a.teschendorff@ucl.ac.uk or s.beck@ucl.ac.uk or a.feber@ucl.ac.uk.Supplementary data are available at Bioinformatics online.

@article{Tian:2017:Bioinformatics:28961746, abstract = {The Illumina Infinium HumanMethylationEPIC BeadChip is the new platform for high-throughput DNA methylation analysis, effectively doubling the coverage compared to the older 450 K array. Here we present a significantly updated and improved version of the Bioconductor package ChAMP, which can be used to analyze EPIC and 450k data. Many enhanced functionalities have been added, including correction for cell-type heterogeneity, network analysis and a series of interactive graphical user interfaces.ChAMP is a BioC package available from https://bioconductor.org/packages/release/bioc/html/ChAMP.html.a.teschendorff@ucl.ac.uk or s.beck@ucl.ac.uk or a.feber@ucl.ac.uk.Supplementary data are available at Bioinformatics online.}, added-at = {2018-07-06T22:27:09.000+0200}, author = {Tian, Y and Morris, T J and Webster, A P and Yang, Z and Beck, S and Feber, A and Teschendorff, A E}, biburl = {https://www.bibsonomy.org/bibtex/2d6f23f3b74641cc6adfc06c099000974/marcsaric}, description = {ChAMP: updated methylation analysis pipeline for Illumina BeadChips. - PubMed - NCBI}, doi = {10.1093/bioinformatics/btx513}, interhash = {28dcc95ed492111c39761675279647e7}, intrahash = {d6f23f3b74641cc6adfc06c099000974}, journal = {Bioinformatics}, keywords = {MUSTREAD methylation microarray pipeline quality-control r-language}, month = dec, number = 24, pages = {3982-3984}, pmid = {28961746}, timestamp = {2018-07-07T10:33:37.000+0200}, title = {ChAMP: updated methylation analysis pipeline for Illumina BeadChips}, url = {https://www.ncbi.nlm.nih.gov/pubmed/28961746}, volume = 33, year = 2017 }