%0 Journal Article %1 Reich:2017:Cell-Syst:28822753 %A Reich, M %A Tabor, T %A Liefeld, T %A Thorvaldsdóttir, H %A Hill, B %A Tamayo, P %A Mesirov, J P %D 2017 %J Cell Syst %K PAYWALL cancer-research jupyter pipeline software %N 2 %P 149-151 %R 10.1016/j.cels.2017.07.003 %T The GenePattern Notebook Environment %U https://www.ncbi.nlm.nih.gov/pubmed/28822753 %V 5 %X Interactive analysis notebook environments promise to streamline genomics research through interleaving text, multimedia, and executable code into unified, sharable, reproducible "research narratives." However, current notebook systems require programming knowledge, limiting their wider adoption by the research community. We have developed the GenePattern Notebook environment (http://www.genepattern-notebook.org), to our knowledge the first system to integrate the dynamic capabilities of notebook systems with an investigator-focused, easy-to-use interface that provides access to hundreds of genomic tools without the need to write code.

@article{Reich:2017:Cell-Syst:28822753, abstract = {Interactive analysis notebook environments promise to streamline genomics research through interleaving text, multimedia, and executable code into unified, sharable, reproducible "research narratives." However, current notebook systems require programming knowledge, limiting their wider adoption by the research community. We have developed the GenePattern Notebook environment (http://www.genepattern-notebook.org), to our knowledge the first system to integrate the dynamic capabilities of notebook systems with an investigator-focused, easy-to-use interface that provides access to hundreds of genomic tools without the need to write code.}, added-at = {2017-10-03T15:57:55.000+0200}, author = {Reich, M and Tabor, T and Liefeld, T and Thorvaldsd{\'o}ttir, H and Hill, B and Tamayo, P and Mesirov, J P}, biburl = {https://www.bibsonomy.org/bibtex/2f1c4c078970de8f434e45e86806d6667/marcsaric}, description = {The GenePattern Notebook Environment. - PubMed - NCBI}, doi = {10.1016/j.cels.2017.07.003}, interhash = {3cee0022d6fd74a6e8e9b7797ec2c8ef}, intrahash = {f1c4c078970de8f434e45e86806d6667}, journal = {Cell Syst}, keywords = {PAYWALL cancer-research jupyter pipeline software}, month = aug, number = 2, pages = {149-151}, pmid = {28822753}, timestamp = {2017-10-03T15:57:55.000+0200}, title = {The GenePattern Notebook Environment}, url = {https://www.ncbi.nlm.nih.gov/pubmed/28822753}, volume = 5, year = 2017 }