%0 Journal Article %1 Bryant04 %A Bryant, David %A Moulton, Vincent %C McGill Centre for Bioinformatics, Montreal, Quebec, Canada. bryant\char64mcb.mcgill.ca %D 2004 %J Mol Biol Evol %K *Algorithms; *Models, *Phylogeny; Analysis; Animals; Archaeal/genetics; Bacterial Chaperonins/genetics; Cluster Computer DNA, Evolution, Genes, Genetic; Humans; Mitochondrial/genetics; Models, Molecular; Proteins/genetics; Salmonella/genetics; Simulation; Software Theoretical; from:davidjamesbryant %N 2 %P 255--265 %R 10.1093/molbev/msh018 %T Neighbor-net: an agglomerative method for the construction of phylogenetic networks. %V 21 %X We present Neighbor-Net, a distance based method for constructing phylogenetic networks that is based on the Neighbor-Joining (NJ) algorithm of Saitou and Nei. Neighbor-Net provides a snapshot of the data that can guide more detailed analysis. Unlike split decomposition, Neighbor-Net scales well and can quickly produce detailed and informative networks for several hundred taxa. We illustrate the method by reanalyzing three published data sets: a collection of 110 highly recombinant Salmonella multi-locus sequence typing sequences, the 135 Äfrican Eve" human mitochondrial sequences published by Vigilant et al., and a collection of 12 Archeal chaperonin sequences demonstrating strong evidence for gene conversion. Neighbor-Net is available as part of the SplitsTree4 software package.

@article{Bryant04, abstract = {We present Neighbor-Net, a distance based method for constructing phylogenetic networks that is based on the Neighbor-Joining (NJ) algorithm of Saitou and Nei. Neighbor-Net provides a snapshot of the data that can guide more detailed analysis. Unlike split decomposition, Neighbor-Net scales well and can quickly produce detailed and informative networks for several hundred taxa. We illustrate the method by reanalyzing three published data sets: a collection of 110 highly recombinant Salmonella multi-locus sequence typing sequences, the 135 "African Eve" human mitochondrial sequences published by Vigilant et al., and a collection of 12 Archeal chaperonin sequences demonstrating strong evidence for gene conversion. Neighbor-Net is available as part of the SplitsTree4 software package.}, added-at = {2009-01-28T01:17:14.000+0100}, address = {McGill Centre for Bioinformatics, Montreal, Quebec, Canada. bryant{\char64}mcb.mcgill.ca}, au = {Bryant, D and Moulton, V}, author = {Bryant, David and Moulton, Vincent}, biburl = {https://www.bibsonomy.org/bibtex/2f5a3c160033a1d92ce2b82d5096044a7/compevol}, crdt = {2003/12/09 05:00}, da = {20040303}, date-added = {2009-01-28 12:07:05 +1300}, date-modified = {2009-01-28 13:04:38 +1300}, dcom = {20041109}, dep = {20031205}, doi = {10.1093/molbev/msh018}, edat = {2003/12/09 05:00}, interhash = {f4fb24695f81c94be507393fb8b5ee89}, intrahash = {f5a3c160033a1d92ce2b82d5096044a7}, issn = {0737-4038 (Print)}, jid = {8501455}, journal = {Mol Biol Evol}, jt = {Molecular biology and evolution}, keywords = {*Algorithms; *Models, *Phylogeny; Analysis; Animals; Archaeal/genetics; Bacterial Chaperonins/genetics; Cluster Computer DNA, Evolution, Genes, Genetic; Humans; Mitochondrial/genetics; Models, Molecular; Proteins/genetics; Salmonella/genetics; Simulation; Software Theoretical; from:davidjamesbryant}, language = {eng}, lr = {20061115}, mhda = {2004/11/13 09:00}, number = 2, own = {NLM}, pages = {255--265}, phst = {2003/12/05 {$[$}aheadofprint{$]$}}, pii = {msh018}, pl = {United States}, pmid = {14660700}, pst = {ppublish}, pt = {Journal Article; Research Support, Non-U.S. Gov't}, rn = {0 (Bacterial Proteins); 0 (Chaperonins); 0 (DNA, Mitochondrial)}, sb = {IM}, so = {Mol Biol Evol. 2004 Feb;21(2):255-65. Epub 2003 Dec 5.}, stat = {MEDLINE}, timestamp = {2009-01-28T01:53:33.000+0100}, title = {Neighbor-net: an agglomerative method for the construction of phylogenetic networks.}, volume = 21, year = 2004 }