It is a routine task in metabolic engineering to introduce multicomponent pathways into a heterologous host for production of metabolites. However, this process sometimes may take weeks to months due to the lack of standardized genetic tools. Here, we present a method for the design and construction of biological parts based on the native genes and regulatory elements in Saccharomyces cerevisiae. We have developed highly efficient protocols (termed YeastFab Assembly) to synthesize these genetic elements as standardized biological parts, which can be used to assemble transcriptional units in a single-tube reaction. In addition, standardized characterization assays are developed using reporter constructs to calibrate the function of promoters. Furthermore, the assembled transcription units can be either assayed individually or applied to construct multi-gene metabolic pathways, which targets a genomic locus or a receiving plasmid effectively, through a simple in vitro reaction. Finally, using β-carotene biosynthesis pathway as an example, we demonstrate that our method allows us not only to construct and test a metabolic pathway in several days, but also to optimize the production through combinatorial assembly of a pathway using hundreds of regulatory biological parts.
%0 Journal Article
%1 Guo2015YeastFab
%A Guo, Yakun
%A Dong, Junkai
%A Zhou, Tong
%A Auxillos, Jamie
%A Li, Tianyi
%A Zhang, Weimin
%A Wang, Lihui
%A Shen, Yue
%A Luo, Yisha
%A Zheng, Yijing
%A Lin, Jiwei
%A Chen, Guo-Qiang
%A Wu, Qingyu
%A Cai, Yizhi
%A Dai, Junbiao
%D 2015
%I Oxford University Press
%J Nucleic Acids Research
%K synthetic-biology yeast
%N 13
%P e88
%R 10.1093/nar/gkv464
%T YeastFab: the design and construction of standard biological parts for metabolic engineering in Saccharomyces cerevisiae
%U http://dx.doi.org/10.1093/nar/gkv464
%V 43
%X It is a routine task in metabolic engineering to introduce multicomponent pathways into a heterologous host for production of metabolites. However, this process sometimes may take weeks to months due to the lack of standardized genetic tools. Here, we present a method for the design and construction of biological parts based on the native genes and regulatory elements in Saccharomyces cerevisiae. We have developed highly efficient protocols (termed YeastFab Assembly) to synthesize these genetic elements as standardized biological parts, which can be used to assemble transcriptional units in a single-tube reaction. In addition, standardized characterization assays are developed using reporter constructs to calibrate the function of promoters. Furthermore, the assembled transcription units can be either assayed individually or applied to construct multi-gene metabolic pathways, which targets a genomic locus or a receiving plasmid effectively, through a simple in vitro reaction. Finally, using β-carotene biosynthesis pathway as an example, we demonstrate that our method allows us not only to construct and test a metabolic pathway in several days, but also to optimize the production through combinatorial assembly of a pathway using hundreds of regulatory biological parts.
@article{Guo2015YeastFab,
abstract = {It is a routine task in metabolic engineering to introduce multicomponent pathways into a heterologous host for production of metabolites. However, this process sometimes may take weeks to months due to the lack of standardized genetic tools. Here, we present a method for the design and construction of biological parts based on the native genes and regulatory elements in Saccharomyces cerevisiae. We have developed highly efficient protocols (termed {YeastFab} Assembly) to synthesize these genetic elements as standardized biological parts, which can be used to assemble transcriptional units in a single-tube reaction. In addition, standardized characterization assays are developed using reporter constructs to calibrate the function of promoters. Furthermore, the assembled transcription units can be either assayed individually or applied to construct multi-gene metabolic pathways, which targets a genomic locus or a receiving plasmid effectively, through a simple in vitro reaction. Finally, using β-carotene biosynthesis pathway as an example, we demonstrate that our method allows us not only to construct and test a metabolic pathway in several days, but also to optimize the production through combinatorial assembly of a pathway using hundreds of regulatory biological parts.},
added-at = {2018-12-02T16:09:07.000+0100},
author = {Guo, Yakun and Dong, Junkai and Zhou, Tong and Auxillos, Jamie and Li, Tianyi and Zhang, Weimin and Wang, Lihui and Shen, Yue and Luo, Yisha and Zheng, Yijing and Lin, Jiwei and Chen, Guo-Qiang and Wu, Qingyu and Cai, Yizhi and Dai, Junbiao},
biburl = {https://www.bibsonomy.org/bibtex/2f692d26433c1bf65557bb1fa1c44cd8c/karthikraman},
citeulike-article-id = {13661992},
citeulike-linkout-0 = {http://dx.doi.org/10.1093/nar/gkv464},
citeulike-linkout-1 = {http://dx.doi.org/10.1093/nar/gkv464},
citeulike-linkout-2 = {http://nar.oxfordjournals.org/content/43/13/e88.abstract},
citeulike-linkout-3 = {http://nar.oxfordjournals.org/content/43/13/e88.full.pdf},
citeulike-linkout-4 = {http://view.ncbi.nlm.nih.gov/pubmed/25956650},
citeulike-linkout-5 = {http://www.hubmed.org/display.cgi?uids=25956650},
day = 27,
doi = {10.1093/nar/gkv464},
interhash = {d008aa5488a5e80f9669c0985cb3bfec},
intrahash = {f692d26433c1bf65557bb1fa1c44cd8c},
issn = {1362-4962},
journal = {Nucleic Acids Research},
keywords = {synthetic-biology yeast},
month = jul,
number = 13,
pages = {e88},
pmid = {25956650},
posted-at = {2015-07-01 10:33:13},
priority = {2},
publisher = {Oxford University Press},
timestamp = {2018-12-02T16:09:07.000+0100},
title = {{YeastFab}: the design and construction of standard biological parts for metabolic engineering in Saccharomyces cerevisiae},
url = {http://dx.doi.org/10.1093/nar/gkv464},
volume = 43,
year = 2015
}