Artikel,

A review of bioinformatic pipeline frameworks

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Brief Bioinform, 18 (3): 530-536 (Mai 2017)
DOI: 10.1093/bib/bbw020

Zusammenfassung

High-throughput bioinformatic analyses increasingly rely on pipeline frameworks to process sequence and metadata. Modern implementations of these frameworks differ on three key dimensions: using an implicit or explicit syntax, using a configuration, convention or class-based design paradigm and offering a command line or workbench interface. Here I survey and compare the design philosophies of several current pipeline frameworks. I provide practical recommendations based on analysis requirements and the user base.

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  • @robin.garcia
  • @marcsaric

Kommentare und Rezensionenanzeigen / verbergen

  • @marcsaric
    vor 7 Jahren (zuletzt bearbeitetvor 7 Jahren)
    High level overview of some pipeline-tools. Not going into much detail or showing more complex examples. So less usefull.
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