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1When is correlation transitive? | What's new
https://terrytao.wordpress.com/2014/06/05/when-is-correlation-transitive/
2 years ago by @becker
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corals
transitivity
fastcor
correlation
transitive
coralstransitivityfastcorcorrelationtransitive
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1inference - How to infer correlations from correlations - Cross Validated
https://stats.stackexchange.com/questions/122888/how-to-infer-correlations-from-correlations
2 years ago by @becker
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corals
cor
transitivity
fastcor
correlation
bounds
interval
transitive
coralscortransitivityfastcorcorrelationboundsintervaltransitive
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1scwatts/fastspar: Rapid and scalable correlation estimation for compositional data
https://github.com/scwatts/fastspar
2 years ago by @becker
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c
correlation
sparse
project:fastcor
network
algorithm
ccorrelationsparseproject:fastcornetworkalgorithm
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1shafferm/SCNIC: Sparse Cooccurence Network Investigation for Compositional data
https://github.com/shafferm/SCNIC
2 years ago by @becker
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co-occurrence
data
correlation
compositional
positive
analysis
project:fastcor
network
coocurrence
co-occurrencedatacorrelationcompositionalpositiveanalysisproject:fastcornetworkcoocurrence
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1PyOD: a Unified Python Library for Anomaly Detection | by Alexandra Amidon | May, 2021 | Towards Data Science
https://towardsdatascience.com/pyod-a-unified-python-library-for-anomaly-detection-3608ec1fe321
3 years ago by @becker
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detection
disruption
cordis
correlation
outlier
detectiondisruptioncordiscorrelationoutlier
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1Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer | SpringerLink
https://link.springer.com/article/10.1186/s13059-019-1851-8
3 years ago by @becker
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gene
correlation
review
survey
coexpression
differential
paper:fastcor
dgca
genecorrelationreviewsurveycoexpressiondifferentialpaper:fastcordgca
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1ryananeff/DGCA: DGCA 2.0: Highly Parallel and Memory-efficient Differential Correlation analysis
https://github.com/ryananeff/DGCA
3 years ago by @becker
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fast
parallel
gene
correlation
analysis
differential
paper:fastcor
dgca
fastparallelgenecorrelationanalysisdifferentialpaper:fastcordgca
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1Large scale correlation mining: fundamental performance limits
http://web.eecs.umich.edu/~hero/Preprints/hero_duke_SAHD15.pdf
3 years ago by @becker
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estimation
statistical
mining
correlation
test
paper:fastcor
estimationstatisticalminingcorrelationtestpaper:fastcor
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1Bootstrapping Correlations
https://www.uvm.edu/~statdhtx/StatPages/Randomization%20Tests/BootstCorr/bootstrapping_correlations.html
4 years ago by @becker
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overview
correlation
bootstrap
references
papers
example
bootstrapping
overviewcorrelationbootstrapreferencespapersexamplebootstrapping
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2Three correlations and a samosa – Picture this maths
https://picturethismaths.wordpress.com/2020/10/31/three-correlations-and-a-samosa/
4 years ago by @becker
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pearson
transitivity
correlation
samosa
pearsontransitivitycorrelationsamosa
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1ikizhvatov/efficient-columnwise-correlation: Efficient ways to compute Pearson's correlation between columns of two matrices in various scientific computing languages
https://github.com/ikizhvatov/efficient-columnwise-correlation
4 years ago by @becker
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r
comparison
fast
julia
efficient
cor
implementation
python
correlation
benchmark
rcomparisonfastjuliaefficientcorimplementationpythoncorrelationbenchmark
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2Latent graph neural networks: Manifold learning 2.0? | by Michael Bronstein | Sep, 2020 | Towards Data Science
https://towardsdatascience.com/manifold-learning-2-99a25eeb677d
4 years ago by @becker
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convolutional
cnn
functional
disruption
pointnet
neural
network
graph
cell
correlation
interaction
dynamic
nn
single
convolutionalcnnfunctionaldisruptionpointnetneuralnetworkgraphcellcorrelationinteractiondynamicnnsingle
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1DGCA: A comprehensive R package for Differential Gene Correlation Analysis - PubMed
https://pubmed.ncbi.nlm.nih.gov/27846853/
4 years ago by @becker
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gene
disruption
cordis
correlation
expression
differential
genedisruptioncordiscorrelationexpressiondifferential
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1Lewandowski-Kurowicka-Joe (LKJ) distribution — Probability Distribution Explorer documentation
http://bois.caltech.edu/distribution_explorer/multivariate_continuous/lkj.html
4 years ago by @becker
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disruption
cordis
correlation
probability
project
multvariate
covariance
distribution
matrix
disruptioncordiscorrelationprobabilityprojectmultvariatecovariancedistributionmatrix
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1Distance correlation - Wikipedia
https://en.wikipedia.org/wiki/Distance_correlation
5 years ago by @becker
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nalab
distance
correlation
classifier
nalabdistancecorrelationclassifier
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1How to use Pearson correlation correctly with time series - Cross Validated
https://stats.stackexchange.com/questions/133155/how-to-use-pearson-correlation-correctly-with-time-series
5 years ago by @becker
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spurious
timeseries
pearson
correlation
series
time
spurioustimeseriespearsoncorrelationseriestime
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1A parallel and sparse approach to calculating correlations between columns of a Pandas DataFrame
https://gist.github.com/mgbckr/12d2f039173d3dffce20f0db3bac9159
5 years ago by @becker
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pandas
df
scipy
pearson
fast
parallel
correlation
sparse
numpy
dataframe
joblib
correlations
pandasdfscipypearsonfastparallelcorrelationsparsenumpydataframejoblibcorrelations
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1The perils of leave-one-out crossvalidation for individual difference analyses
http://www.russpoldrack.org/2012/
5 years ago by @becker
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linear
one
en
loo
out
negative
cross
correlation
leave
regression
elastic
net
validation
linearoneenloooutnegativecrosscorrelationleaveregressionelasticnetvalidation
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1Response to “Perils of LOO crossvalidation”
http://not2hastie.tumblr.com/
5 years ago by @becker
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linear
one
en
loo
out
negative
cross
correlation
leave
regression
elastic
net
validation
linearoneenloooutnegativecrosscorrelationleaveregressionelasticnetvalidation
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1R: Find the correlations, sample sizes, and probability values...
http://finzi.psych.upenn.edu/library/psych/html/corr.test.html
9 years ago by @nosebrain
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r
corr.test
correlation
rcorr.testcorrelation
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publications (hide)74
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6The max-min hill-climbing Bayesian network structure learning algorithm
I. Tsamardinos, L. Brown, and C. Aliferis. Machine learning, 65 (1): 31--78 (2006)
2 years ago by @becker
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bayesian
citedby:scholar:timestamp:2022-9-23
causation
bayes
correlation
citedby:scholar:count:1912
partial
network
paper:fastcor
bayesiancitedby:scholar:timestamp:2022-9-23causationbayescorrelationcitedby:scholar:count:1912partialnetworkpaper:fastcor
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1Corruption of the Pearson correlation coefficient by measurement error and its estimation, bias, and correction under different error models
E. Saccenti, M. Hendriks, and A. Smilde. Scientific reports, 10 (1): 1--19 (2020)
2 years ago by @becker
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estimation
citedby:scholar:timestamp:2022-9-23
citedby:scholar:count:53
error
bias
correlation
data
paper:fastcor
correction
estimationcitedby:scholar:timestamp:2022-9-23citedby:scholar:count:53errorbiascorrelationdatapaper:fastcorcorrection
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1DiffCorr: an R package to analyze and visualize differential correlations in biological networks
A. Fukushima. Gene, 518 (1): 209--214 (2013)
2 years ago by @becker
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correlation
citedby:scholar:count:142
analysis
citedby:scholar:timestamp:2022-9-18
differential
paper:fastcor
correlationcitedby:scholar:count:142analysiscitedby:scholar:timestamp:2022-9-18differentialpaper:fastcor
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2The discordant method: a novel approach for differential correlation
C. Siska, R. Bowler, and K. Kechris. Bioinformatics, 32 (5): 690--696 (2016)
2 years ago by @becker
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correlation
citedby:scholar:count:28
analysis
citedby:scholar:timestamp:2022-9-18
differential
paper:fastcor
correlationcitedby:scholar:count:28analysiscitedby:scholar:timestamp:2022-9-18differentialpaper:fastcor
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2DCARS: differential correlation across ranked samples
S. Ghazanfar, D. Strbenac, J. Ormerod, J. Yang, and E. Patrick. Bioinformatics, 35 (5): 823--829 (2019)
2 years ago by @becker
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correlation
citedby:scholar:count:5
analysis
citedby:scholar:timestamp:2022-9-18
differential
paper:fastcor
correlationcitedby:scholar:count:5analysiscitedby:scholar:timestamp:2022-9-18differentialpaper:fastcor
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2Comparison of the predicted and observed secondary structure of T4 phage lysozyme
B. Matthews. Biochimica et Biophysica Acta (BBA)-Protein Structure, 405 (2): 442--451 (1975)
2 years ago by @becker
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phi
citedby:scholar:timestamp:2022-9-12
binary
correlation
citedby:scholar:count:4936
coefficient
paper:fastcor
phicitedby:scholar:timestamp:2022-9-12binarycorrelationcitedby:scholar:count:4936coefficientpaper:fastcor
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2Reducing bias and error in the correlation coefficient due to nonnormality
A. Bishara, and J. Hittner. Educational and psychological measurement, 75 (5): 785--804 (2015)
2 years ago by @becker
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error
citedby:scholar:count:172
citedby:scholar:timestamp:2022-9-10
sampling
bias
correlation
coefficient
normality
paper:fastcor
errorcitedby:scholar:count:172citedby:scholar:timestamp:2022-9-10samplingbiascorrelationcoefficientnormalitypaper:fastcor
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1A tutorial on regularized partial correlation networks.
S. Epskamp, and E. Fried. Psychological methods, 23 (4): 617 (2018)
2 years ago by @becker
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citedby:scholar:timestamp:2022-9-10
correlation
partial
network
networks
citedby:scholar:count:1004
paper:fastcor
citedby:scholar:timestamp:2022-9-10correlationpartialnetworknetworkscitedby:scholar:count:1004paper:fastcor
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1Partial correlation coefficients
B. Brown, and S. Hendrix. Encyclopedia of statistics in behavioral science, (2005)
2 years ago by @becker
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citedby:scholar:count:23
citedby:scholar:timestamp:2022-9-10
correlation
coefficient
partial
paper:fastcor
citedby:scholar:count:23citedby:scholar:timestamp:2022-9-10correlationcoefficientpartialpaper:fastcor
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1Genetic and environmental perturbations lead to regulatory decoherence
A. Lea, M. Subramaniam, A. Ko, T. Lehtimäki, E. Raitoharju, M. Kähönen, I. Seppälä, N. Mononen, O. Raitakari, M. Ala-Korpela and 1 other author(s). Elife, (2019)
2 years ago by @becker
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genetic
decoherence
coherence
gene
cordis
correlation
regulatory
citedby:scholar:timestamp:2022-7-28
citedby:scholar:count:28
network
networks
differential
geneticdecoherencecoherencegenecordiscorrelationregulatorycitedby:scholar:timestamp:2022-7-28citedby:scholar:count:28networknetworksdifferential
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4A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics
J. Schäfer, and K. Strimmer. Statistical applications in genetics and molecular biology, (2005)
2 years ago by @becker
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citedby:scholar:count:1699
correlation
regularization
citedby:scholar:timestamp:2022-4-27
paper:fastcor
citedby:scholar:count:1699correlationregularizationcitedby:scholar:timestamp:2022-4-27paper:fastcor
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1Profiling functional disruption in biological systems
M. Becker, D. Feyaerts, I. Stelzer, E. Berson, A. Chang, C. Espinosa, D. Francesco, R. Fallahzadeh, I. Maric, S. Mataraso and 10 other author(s). Under review, (2022)
2 years ago by @becker
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myown
functional
disruption
correlation
skipstats
myownfunctionaldisruptioncorrelationskipstats
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2Large-scale correlation network construction for unraveling the coordination of complex biological systems
M. Becker, H. Nassar, C. Espinosa, I. Stelzer, D. Feyaerts, E. Berson, N. Bidoki, A. Chang, G. Saarunya, A. Culos and 20 other author(s). Nature Computational Science, (April 2023)
2 years ago by @becker
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myown
project:2023-tracking
correlation
skipstats
myownproject:2023-trackingcorrelationskipstats
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1Measuring and testing dependence by correlation of distances
G. Székely, M. Rizzo, and N. Bakirov. The annals of statistics, 35 (6): 2769--2794 (2007)
2 years ago by @becker
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citedby:scholar:timestamp:2022-1-28
distances
citedby:scholar:count:1952
distance
correlation
um1
citedby:scholar:timestamp:2022-1-28distancescitedby:scholar:count:1952distancecorrelationum1
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2CorDiffViz: an R package for visualizing multi-omics differential correlation networks
S. Yu, M. Drton, D. Promislow, and A. Shojaie. BMC bioinformatics, 22 (1): 1--12 (2021)
2 years ago by @becker
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visualization
fastcor
correlation
difference
network
networks
differential
paper:fastcor
visualizationfastcorcorrelationdifferencenetworknetworksdifferentialpaper:fastcor
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1Co-Operation: Fast Correlation, Covariance, and Cosine Similarity
D. Schmidt. (2021)R package version 0.6-3.
3 years ago by @becker
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comparison
correlation
baseline
paper:fastcor
comparisoncorrelationbaselinepaper:fastcor
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2Fast R Functions for Robust Correlations and Hierarchical Clustering
P. Langfelder, and S. Horvath. Journal of Statistical Software, 46 (11): 1--17 (2012)
3 years ago by @becker
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comparison
correlation
baseline
paper:fastcor
comparisoncorrelationbaselinepaper:fastcor
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1Rfast: A Collection of Efficient and Extremely Fast R Functions
M. Papadakis, M. Tsagris, M. Dimitriadis, S. Fafalios, I. Tsamardinos, M. Fasiolo, G. Borboudakis, J. Burkardt, C. Zou, K. Lakiotaki and 1 other author(s). (2021)R package version 2.0.3.
3 years ago by @becker
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comparison
correlation
baseline
paper:fastcor
comparisoncorrelationbaselinepaper:fastcor
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1Forward regression in R: from the extreme slow to the extreme fast
M. Tsagris, and M. Papadakis. Journal of Data Science, 16 (4): 771--780 (2018)
3 years ago by @becker
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comparison
citedby:scholar:count:1
correlation
citedby:scholar:timestamp:2021-9-25
baseline
paper:fastcor
comparisoncitedby:scholar:count:1correlationcitedby:scholar:timestamp:2021-9-25baselinepaper:fastcor
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3Explainable classification of brain networks via contrast subgraphs
T. Lanciano, F. Bonchi, and A. Gionis. Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining, page 3308--3318. (2020)
3 years ago by @becker
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disruption
subgraphs
learning
kdd
explainable
networks
citedby:scholar:timestamp:2021-8-8
classification
graphs
contrast
citedby:scholar:count:4
correlation
machine
interpretable
disruptionsubgraphslearningkddexplainablenetworkscitedby:scholar:timestamp:2021-8-8classificationgraphscontrastcitedby:scholar:count:4correlationmachineinterpretable
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