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A comparison of weighted ensemble and Markov state model methodologies, , , и . The Journal of Chemical Physics, 142 (21): 214113-- (июня 2015)AWE-WQ: Fast-Forwarding Molecular Dynamics Using the Accelerated Weighted Ensemble, , , , , , и . Journal of Chemical Information and Modeling, 54 (10): 3033-3043 (2014)PMID: 25207854.Longer Time Steps for Molecular Dynamics. University of Illinois Urbana-Champaign, USA, (1999)PROTOMOL: A Molecular Dynamics Research Framework for Algorithmic Development., , и . International Conference on Computational Science, том 2659 из Lecture Notes in Computer Science, стр. 50-59. Springer, (2003)MDL, A Domain-Specific Language for Molecular Dynamics., , и . Annual Simulation Symposium, стр. 256-266. IEEE Computer Society, (2007)MDSIMAID: Automatic parameter optimization in fast electrostatic algorithms., , , и . J. Comput. Chem., 26 (10): 1021-1031 (2005)ProtoMol: A Molecular Dynamics Framework with Incremental Parallelization., и . PPSC, (2001)Nonlinear Instability in Multiple Time Stepping Molecular Dynamics., , и . SAC, стр. 167-171. ACM, (2003)Parallel multigrid summation for the N-body problem., , и . J. Parallel Distributed Comput., 65 (8): 949-962 (2005)Multiscale Dynamics of Macromolecules Using Normal Mode Langevin., , и . Pacific Symposium on Biocomputing, стр. 240-251. World Scientific Publishing, (2010)