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Geometric Crossover for Biological Sequences

, , and . Proceedings of the 9th European Conference on Genetic Programming, volume 3905 of Lecture Notes in Computer Science, page 121--132. Budapest, Hungary, Springer, (10 - 12 April 2006)

Abstract

This paper extends a geometric framework for interpreting crossover and mutation to the case of sequences. This representation is important because it is the link between artificial evolution and biological evolution. We define and theoretically study geometric crossover for sequences under edit distance and show its intimate connection with the biological notion of sequence homology.

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