%0 Journal Article %1 Morris:2014:Bioinformatics:24336642 %A Morris, T J %A Butcher, L M %A Feber, A %A Teschendorff, A E %A Chakravarthy, A R %A Wojdacz, T K %A Beck, S %D 2014 %J Bioinformatics %K MUSTREAD fulltext methylation microarray open-source pipeline quality-control r-language software %N 3 %P 428-430 %R 10.1093/bioinformatics/btt684 %T ChAMP: 450k Chip Analysis Methylation Pipeline %U https://www.ncbi.nlm.nih.gov/pubmed/24336642/ %V 30 %X The Illumina Infinium HumanMethylation450 BeadChip is a new platform for high-throughput DNA methylation analysis. Several methods for normalization and processing of these data have been published recently. Here we present an integrated analysis pipeline offering a choice of the most popular normalization methods while also introducing new methods for calling differentially methylated regions and detecting copy number aberrations.ChAMP is implemented as a Bioconductor package in R. The package and the vignette can be downloaded at bioconductor.org

@article{Morris:2014:Bioinformatics:24336642, abstract = {The Illumina Infinium HumanMethylation450 BeadChip is a new platform for high-throughput DNA methylation analysis. Several methods for normalization and processing of these data have been published recently. Here we present an integrated analysis pipeline offering a choice of the most popular normalization methods while also introducing new methods for calling differentially methylated regions and detecting copy number aberrations.ChAMP is implemented as a Bioconductor package in R. The package and the vignette can be downloaded at bioconductor.org}, added-at = {2018-07-08T10:17:26.000+0200}, author = {Morris, T J and Butcher, L M and Feber, A and Teschendorff, A E and Chakravarthy, A R and Wojdacz, T K and Beck, S}, biburl = {https://www.bibsonomy.org/bibtex/2402132aed9a1c99d542ffaf912add14b/marcsaric}, description = {ChAMP: 450k Chip Analysis Methylation Pipeline. - PubMed - NCBI}, doi = {10.1093/bioinformatics/btt684}, interhash = {5dd56aa7927921560db99292a2ae724f}, intrahash = {402132aed9a1c99d542ffaf912add14b}, journal = {Bioinformatics}, keywords = {MUSTREAD fulltext methylation microarray open-source pipeline quality-control r-language software}, month = feb, number = 3, pages = {428-430}, pmid = {24336642}, timestamp = {2018-07-08T10:17:26.000+0200}, title = {ChAMP: 450k Chip Analysis Methylation Pipeline}, url = {https://www.ncbi.nlm.nih.gov/pubmed/24336642/}, volume = 30, year = 2014 }