Popular sequence alignment tools such as BWA convert a reference genome to an indexing data structure based on the Burrows-Wheeler Transform (BWT), from which matches to individual query sequences can be rapidly determined. However the utility of also indexing the query sequences themselves remains relatively unexplored.
%0 Book Section
%1 year=2012
%A Cox, AnthonyJ.
%A Jakobi, Tobias
%A Rosone, Giovanna
%A Schulz-Trieglaff, OleB.
%B Algorithms in Bioinformatics
%D 2012
%E Raphael, Ben
%E Tang, Jijun
%I Springer Berlin Heidelberg
%K bioinformatics dna
%P 214-224
%R 10.1007/978-3-642-33122-0_17
%T Comparing DNA Sequence Collections by Direct Comparison of Compressed Text Indexes
%V 7534
%X Popular sequence alignment tools such as BWA convert a reference genome to an indexing data structure based on the Burrows-Wheeler Transform (BWT), from which matches to individual query sequences can be rapidly determined. However the utility of also indexing the query sequences themselves remains relatively unexplored.
%@ 978-3-642-33121-3
@incollection{year={2012},
abstract = {Popular sequence alignment tools such as BWA convert a reference genome to an indexing data structure based on the Burrows-Wheeler Transform (BWT), from which matches to individual query sequences can be rapidly determined. However the utility of also indexing the query sequences themselves remains relatively unexplored.},
added-at = {2013-04-08T17:30:15.000+0200},
author = {Cox, AnthonyJ. and Jakobi, Tobias and Rosone, Giovanna and Schulz-Trieglaff, OleB.},
biburl = {https://www.bibsonomy.org/bibtex/248bff745d10b721f09e7200100e6d277/ytyoun},
booktitle = {Algorithms in Bioinformatics},
doi = {10.1007/978-3-642-33122-0_17},
editor = {Raphael, Ben and Tang, Jijun},
interhash = {ea58cb3b8dafdaf2eb538ad583c95df0},
intrahash = {48bff745d10b721f09e7200100e6d277},
isbn = {978-3-642-33121-3},
keywords = {bioinformatics dna},
pages = {214-224},
publisher = {Springer Berlin Heidelberg},
series = {Lecture Notes in Computer Science},
timestamp = {2013-04-08T17:30:16.000+0200},
title = {Comparing DNA Sequence Collections by Direct Comparison of Compressed Text Indexes},
volume = 7534,
year = 2012
}