A collection of Python programs to process fMRI and PET medical imaging data for research purposes. The programs were written for the Waisman Brain Imaging Lab, University of Wisconsin-Madison.
RunSnakeRun is a small GUI utility that allows you to view (Python) cProfile or Profile profiler dumps in a sortable GUI view. It allows you to explore the profiler information using a "square map" visualization or sortable tables of data.
Veusz is a GUI scientific plotting and graphing package. It is designed to produce publication-ready Postscript or PDF output. SVG, EMF and bitmap formats export are also supported. The program runs under Unix/Linux, Windows or Mac OS X, and binaries are provided. Data can be read from text, CSV or FITS files, and data can be manipulated or examined from within the application.
News: all of the few remaining calls to scipy have been replaced with calls to numpy. Versions 0.1.8 and above do not require scipy as a dependency. Introduction This library provides Python functions for agglomerative clustering. Its features include * generating hierarchical clusters from distance matrices * computing distance matrices from observation vectors * computing statistics on clusters * cutting linkages to generate flat clusters * and visualizing clusters with dendrograms. The interface is very similar to MATLAB's Statistics Toolbox API to make code easier to port from MATLAB to Python/Numpy. The core implementation of this library is in C for efficiency.
ClusterViz is a software to visualize the clustering process using the family of k-means algorithms. The program is free software under the GNU General Public License (GPL). ClusterViz allows to cluster data while visualizing an up to three dimensional projection. The clustering process is visualized using OpenGL. As clustering algorithms the family of k-means algorithms is implemented, including mixture models.
Zwiki is.. a powerful, innovative, user-friendly wiki engine based on the Zope 2 platform. This project has been developed since 1999 by Simon Michael and contributors around the world, powers many Zope and non-Zope-related wikis, and is free software released under the GNU GPL . Please explore the site, and enjoy the software. Your questions, comments, patches and donations are most welcome!
Elefant (Efficient Learning, Large-scale Inference, and Optimisation Toolkit) is an open source library for machine learning licensed under the Mozilla Public License (MPL). We develop an open source machine learning toolkit which provides
Eric is a full featured Python and Ruby editor and IDE, written in python. It is based on the cross platform Qt gui toolkit, integrating the highly flexible Scintilla editor control.
The Internet Communications Engine (Ice) is a modern object-oriented middleware with support for C++, .NET, Java, Python, Objective-C, Ruby, and PHP. Ice is used in many mission-critical projects by companies all over the world. Ice is easy to learn, yet provides a powerful network infrastructure and vast array of features for demanding technical applications. Ice is free software, available with full source, and released under the terms of GNU General Public License (GPL). Commercial licenses are available for customers who wish to use Ice for closed-source software.
PyNIO is a Python package that allows read and/or write access to a variety of data formats using an interface modeled on netCDF. PyNIO is composed of a C library called libnio along with a Python module based on and with an interface similar to the Scientific.IO.NetCDF module written by Konrad Hinsen. The C library contains the same data I/O code used in NCL, a scripting language developed for analysis and visualization of geo-scientific data. Currently supported formats include: * netCDF (read/write) * GRIB 1 and GRIB 2 (read-only) * HDF 4 (read/write for Scientific DataSets only) * HDFEOS 2 (read-only for Grid and Swath data only) * CCM history files (read-only)