Sim VIZ - A desktop virtual environment for visualization and analysis
of protein multiple simulation trajectories
COMPUTATIONAL SCIENCE AND ITS APPLICATIONS - ICCSA 2006, PT 1, volume 3980 of LECTURE NOTES IN COMPUTER SCIENCE, SPRINGER-VERLAG BERLIN, HEIDELBERGER PLATZ 3, D-14197 BERLIN, GERMANY, (2006)Abstract
In silico protein conformation simulation generates massive amounts of
data which needs to be properly visualized and analyzed. We are
applying Desktop Information-Rich Virtual Environments (Desktop IRVE's)
techniques and concepts to aid multiple trajectory simulation analysis,
improving user experience and developing a problem-solving environment
to help the decision making process. We will present Sim VIZ, a tool
which integrates visualization to simulation analysis, improving
previous knowledge about trajectories. This environment shows
informative panels, Contact Maps, RMSD charts, the Ramachandran Plot
and a Parallel Coordinate multidimensional visualization of simulation
output in a single rendering scene. Sim VIZ also opens multiple
trajectories along with user associated information concerning many
aspects of the simulation. Sim VIZ is an integrated problem solving
environment of multiple trajectories of protein simulations, offering
various kinds of analysis and visualization tools used by the community
to validate protein structures or to gather a better understanding of
the protein folding process.
Links and resources
Tags
community
@huiyangsfsu's tags highlighted