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LinearPartition: Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities., , , and . CoRR, (2019)Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign., , and . BMC Bioinform., (2007)Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change., , and . BMC Bioinform., (2006)RNAstructure: software for RNA secondary structure prediction and analysis., and . BMC Bioinform., (2010)AccessFold: predicting RNA-RNA interactions with consideration for competing self-structure., , and . Bioinform., 32 (7): 1033-1039 (2016)Predicting a set of minimal free energy RNA secondary structures common to two sequences.. Bioinform., 21 (10): 2246-2253 (2005)Algorithm for optimized mRNA design improves stability and immunogenicity., , , , , , , , , and 6 other author(s). Nat., 621 (7978): 396-403 (2023)TurboFold: Iterative probabilistic estimation of secondary structures for multiple RNA sequences., , and . BMC Bioinform., (2011)Messenger and Non-Coding RNA Design via Expected Partition Function and Continuous Optimization., , , , and . CoRR, (2024)LinearAlifold: Linear-Time Consensus Structure Prediction for RNA Alignments., , , , and . CoRR, (2022)