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BBK* (Branch and Bound over K*): A Provable and Efficient Ensemble-Based Algorithm to Optimize Stability and Binding Affinity over Large Sequence Spaces.

, , , and . RECOMB, volume 10229 of Lecture Notes in Computer Science, page 157-172. (2017)

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Minimization-Aware Recursive K^* K ∗ ( MARK^* MARK ∗ ): A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape., , , and . RECOMB, volume 11467 of Lecture Notes in Computer Science, page 101-119. Springer, (2019)Novel Computational Protein Design Algorithms with Sparse Residue Interaction Graphs, Ensembles, and Mathematical Guarantees, and their Application to Antibody Design.. Duke University, Durham, NC, USA, (2018)base-search.net (ftdukeunivdsp:oai:localhost:10161/16821).Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD: KRas protein-protein interface., , , , , and . PLoS Comput. Biol., (2020)LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency., , and . RECOMB, volume 9649 of Lecture Notes in Computer Science, page 122-136. Springer, (2016)BWM*: A Novel, Provable, Ensemble-Based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design., , , and . RECOMB, volume 9029 of Lecture Notes in Computer Science, page 154-166. Springer, (2015)BBK* (Branch and Bound over K*): A Provable and Efficient Ensemble-Based Algorithm to Optimize Stability and Binding Affinity over Large Sequence Spaces., , , and . RECOMB, volume 10229 of Lecture Notes in Computer Science, page 157-172. (2017)