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Epidemiological data analysis of viral quasispecies in the next-generation sequencing era., , , and . Briefings Bioinform., 22 (1): 96-108 (2021)MicrobeTrace: Retooling molecular epidemiology for rapid public health response., , , , , , and . PLoS Comput. Biol., (2021)A Novel Network Representation of SARS-CoV-2 Sequencing Data., , , , , , , , , and 2 other author(s). ISBRA, volume 13064 of Lecture Notes in Computer Science, page 165-175. Springer, (2021)Coarse-grained model of protein interaction for bio-inspired nano-communication., , , , , and . ICUMT, page 260-262. IEEE, (2014)Scalable Reconstruction of SARS-CoV-2 Phylogeny with Recurrent Mutations., , , , , and . J. Comput. Biol., 28 (11): 1130-1141 (2021)Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data., , , , , , , , and . ISBRA, volume 12304 of Lecture Notes in Computer Science, page 335-343. Springer, (2020)Benchmarking of computational error-correction methods for next-generation sequencing data., , , , , , , , , and 16 other author(s). BCB, page 63:1. ACM, (2020)QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data., , , , , , , , , and 6 other author(s). Bioinform., 34 (1): 163-170 (2018)From Alpha to Zeta: Identifying Variants and Subtypes of SARS-CoV-2 Via Clustering., , , , , , , and . J. Comput. Biol., 28 (11): 1113-1129 (2021)Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data., , , , , , , , , and . J. Comput. Biol., 28 (8): 842-855 (2021)