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MSMBuilder: Statistical Models for Biomolecular Dynamics, , , , , , , , and . Biophysical Journal, 112 (1): 10 - 15 (2017)Accelerating molecular dynamic simulation on graphics processing units, , , , , , , , and . J. Comput. Chem., 30 (6): 864--872 (April 2009)PMID: 19191337.Molecular dynamics simulations using the drude polarizable force field on GPUs with OpenMM: Implementation, validation, and benchmarks., , , and . J. Comput. Chem., 39 (21): 1682-1689 (2018)Fast Flexible Modeling of RNA Structure Using Internal Coordinates., , , , and . IEEE ACM Trans. Comput. Biol. Bioinform., 8 (5): 1247-1257 (2011)Weakly-Supervised Deep Learning of Heat Transport via Physics Informed Loss., , , , and . CoRR, (2018)OpenMM 8: Molecular Dynamics Simulation with Machine Learning Potentials., , , , , , , , , and 12 other author(s). CoRR, (2023)OpenMM 7: Rapid development of high performance algorithms for molecular dynamics., , , , , , , , , and 3 other author(s). PLoS Comput. Biol., (2017)Solving the RNA design problem with reinforcement learning., , , and . PLoS Comput. Biol., (2018)TorchMD-Net 2.0: Fast Neural Network Potentials for Molecular Simulations., , , , , , , , and . CoRR, (2024)Efficient nonbonded interactions for molecular dynamics on a graphics processing unit., and . J. Comput. Chem., 31 (6): 1268-1272 (2010)