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Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

K. Ellrott, M. Bailey, G. Saksena, K. Covington, C. Kandoth, C. Stewart, J. Hess, S. Ma, K. Chiotti, M. McLellan, H. Sofia, C. Hutter, G. Getz, D. Wheeler, L. Ding, S. Caesar-Johnson, J. Demchok, I. Felau, M. Kasapi, M. Ferguson, C. Hutter, H. Sofia, R. Tarnuzzer, Z. Wang, L. Yang, J. Zenklusen, J. Zhang, S. Chudamani, J. Liu, L. Lolla, R. Naresh, T. Pihl, Q. Sun, Y. Wan, Y. Wu, J. Cho, T. DeFreitas, S. Frazer, N. Gehlenborg, G. Getz, D. Heiman, J. Kim, M. Lawrence, P. Lin, S. Meier, M. Noble, G. Saksena, D. Voet, H. Zhang, B. Bernard, N. Chambwe, V. Dhankani, T. Knijnenburg, R. Kramer, K. Leinonen, Y. Liu, M. Miller, S. Reynolds, I. Shmulevich, V. Thorsson, W. Zhang, R. Akbani, B. Broom, A. Hegde, Z. Ju, R. Kanchi, A. Korkut, J. Li, H. Liang, S. Ling, W. Liu, Y. Lu, G. Mills, K. Ng, A. Rao, M. Ryan, J. Wang, J. Weinstein, J. Zhang, A. Abeshouse, J. Armenia, D. Chakravarty, W. Chatila, I. de Bruijn, J. Gao, B. Gross, Z. Heins, R. Kundra, K. La, M. Ladanyi, A. Luna, M. Nissan, A. Ochoa, S. Phillips, E. Reznik, F. Sanchez-Vega, C. Sander, N. Schultz, R. Sheridan, S. Sumer, Y. Sun, B. Taylor, J. Wang, H. Zhang, P. Anur, M. Peto, P. Spellman, C. Benz, J. Stuart, C. Wong, C. Yau, D. Hayes, Parker, M. Wilkerson, A. Ally, M. Balasundaram, R. Bowlby, D. Brooks, R. Carlsen, E. Chuah, N. Dhalla, R. Holt, S. Jones, K. Kasaian, D. Lee, Y. Ma, M. Marra, M. Mayo, R. Moore, A. Mungall, K. Mungall, A. Robertson, S. Sadeghi, J. Schein, P. Sipahimalani, A. Tam, N. Thiessen, K. Tse, T. Wong, A. Berger, R. Beroukhim, A. Cherniack, C. Cibulskis, S. Gabriel, G. Gao, G. Ha, M. Meyerson, S. Schumacher, J. Shih, M. Kucherlapati, R. Kucherlapati, S. Baylin, L. Cope, L. Danilova, M. Bootwalla, P. Lai, D. Maglinte, D. Berg, D. Weisenberger, J. Auman, S. Balu, T. Bodenheimer, C. Fan, K. Hoadley, A. Hoyle, S. Jefferys, C. Jones, S. Meng, P. Mieczkowski, L. Mose, A. Perou, C. Perou, J. Roach, Y. Shi, J. Simons, T. Skelly, M. Soloway, D. Tan, U. Veluvolu, H. Fan, T. Hinoue, P. Laird, H. Shen, W. Zhou, M. Bellair, K. Chang, K. Covington, C. Creighton, H. Dinh, H. Doddapaneni, L. Donehower, J. Drummond, R. Gibbs, R. Glenn, W. Hale, Y. Han, J. Hu, V. Korchina, S. Lee, L. Lewis, W. Li, X. Liu, M. Morgan, D. Morton, D. Muzny, J. Santibanez, M. Sheth, E. Shinbrot, L. Wang, M. Wang, D. Wheeler, L. Xi, F. Zhao, J. Hess, E. Appelbaum, M. Bailey, M. Cordes, L. Ding, C. Fronick, L. Fulton, R. Fulton, C. Kandoth, E. Mardis, M. McLellan, C. Miller, H. Schmidt, R. Wilson, D. Crain, E. Curley, J. Gardner, K. Lau, D. Mallery, S. Morris, J. Paulauskis, R. Penny, C. Shelton, T. Shelton, M. Sherman, E. Thompson, P. Yena, J. Bowen, J. Gastier-Foster, M. Gerken, K. Leraas, T. Lichtenberg, N. Ramirez, L. Wise, E. Zmuda, N. Corcoran, T. Costello, C. Hovens, A. Carvalho, A. de Carvalho, J. Fregnani, A. Longatto-Filho, R. Reis, C. Scapulatempo-Neto, H. Silveira, D. Vidal, A. Burnette, J. Eschbacher, B. Hermes, A. Noss, R. Singh, M. Anderson, P. Castro, M. Ittmann, D. Huntsman, B. Kohl, X. Le, R. Thorp, C. Andry, E. Duffy, V. Lyadov, O. Paklina, G. Setdikova, A. Shabunin, M. Tavobilov, C. McPherson, R. Warnick, R. Berkowitz, D. Cramer, C. Feltmate, N. Horowitz, A. Kibel, M. Muto, C. Raut, A. Malykh, J. Barnholtz-Sloan, W. Barrett, K. Devine, J. Fulop, Q. Ostrom, K. Shimmel, Y. Wolinsky, A. Sloan, A. Rose, F. Giuliante, M. Goodman, B. Karlan, C. Hagedorn, J. Eckman, J. Harr, J. Myers, K. Tucker, L. Zach, B. Deyarmin, H. Hu, L. Kvecher, C. Larson, R. Mural, S. Somiari, A. Vicha, T. Zelinka, J. Bennett, M. Iacocca, B. Rabeno, P. Swanson, M. Latour, L. Lacombe, B. Têtu, A. Bergeron, M. McGraw, S. Staugaitis, J. Chabot, H. Hibshoosh, A. Sepulveda, T. Su, T. Wang, O. Potapova, O. Voronina, L. Desjardins, O. Mariani, S. Roman-Roman, X. Sastre, M. Stern, F. Cheng, S. Signoretti, A. Berchuck, D. Bigner, E. Lipp, J. Marks, S. McCall, R. McLendon, A. Secord, A. Sharp, M. Behera, D. Brat, A. Chen, K. Delman, S. Force, F. Khuri, K. Magliocca, S. Maithel, J. Olson, T. Owonikoko, A. Pickens, S. Ramalingam, D. Shin, G. Sica, E. Meir, H. Zhang, W. Eijckenboom, A. Gillis, E. Korpershoek, L. Looijenga, W. Oosterhuis, H. Stoop, K. van Kessel, E. Zwarthoff, C. Calatozzolo, L. Cuppini, S. Cuzzubbo, F. DiMeco, G. Finocchiaro, L. Mattei, A. Perin, B. Pollo, C. Chen, J. Houck, P. Lohavanichbutr, A. Hartmann, C. Stoehr, R. Stoehr, H. Taubert, S. Wach, B. Wullich, W. Kycler, D. Murawa, M. Wiznerowicz, K. Chung, W. Edenfield, J. Martin, E. Baudin, G. Bubley, R. Bueno, A. Rienzo, W. Richards, S. Kalkanis, T. Mikkelsen, H. Noushmehr, L. Scarpace, N. Girard, M. Aymerich, E. Campo, E. Giné, A. Guillermo, N. Bang, P. Hanh, B. Phu, Y. Tang, H. Colman, K. Evason, P. Dottino, J. Martignetti, H. Gabra, H. Juhl, T. Akeredolu, S. Stepa, D. Hoon, K. Ahn, K. Kang, F. Beuschlein, A. Breggia, M. Birrer, D. Bell, M. Borad, A. Bryce, E. Castle, V. Chandan, J. Cheville, J. Copland, M. Farnell, T. Flotte, N. Giama, T. Ho, M. Kendrick, J. Kocher, K. Kopp, C. Moser, D. Nagorney, D. O'Brien, B. O'Neill, T. Patel, G. Petersen, F. Que, M. Rivera, L. Roberts, R. Smallridge, T. Smyrk, M. Stanton, R. Thompson, M. Torbenson, J. Yang, L. Zhang, F. Brimo, J. Ajani, A. Gonzalez, C. Behrens, J. Bondaruk, R. Broaddus, B. Czerniak, B. Esmaeli, J. Fujimoto, J. Gershenwald, C. Guo, A. Lazar, C. Logothetis, F. Meric-Bernstam, C. Moran, L. Ramondetta, D. Rice, A. Sood, P. Tamboli, T. Thompson, P. Troncoso, A. Tsao, I. Wistuba, C. Carter, L. Haydu, P. Hersey, V. Jakrot, H. Kakavand, R. Kefford, K. Lee, G. Long, G. Mann, M. Quinn, R. Saw, R. Scolyer, K. Shannon, A. Spillane, J. Stretch, M. Synott, J. Thompson, J. Wilmott, H. Al-Ahmadie, T. Chan, R. Ghossein, A. Gopalan, D. Levine, V. Reuter, S. Singer, B. Singh, N. Tien, T. Broudy, C. Mirsaidi, P. Nair, P. Drwiega, J. Miller, J. Smith, H. Zaren, J. Park, N. Hung, E. Kebebew, W. Linehan, A. Metwalli, K. Pacak, P. Pinto, M. Schiffman, L. Schmidt, C. Vocke, N. Wentzensen, R. Worrell, H. Yang, M. Moncrieff, C. Goparaju, J. Melamed, H. Pass, N. Botnariuc, I. Caraman, M. Cernat, I. Chemencedji, A. Clipca, S. Doruc, G. Gorincioi, S. Mura, M. Pirtac, I. Stancul, D. Tcaciuc, M. Albert, I. Alexopoulou, A. Arnaout, J. Bartlett, J. Engel, S. Gilbert, J. Parfitt, H. Sekhon, G. Thomas, D. Rassl, R. Rintoul, C. Bifulco, R. Tamakawa, W. Urba, N. Hayward, H. Timmers, A. Antenucci, F. Facciolo, G. Grazi, M. Marino, R. Merola, R. de Krijger, A. Gimenez-Roqueplo, A. Piché, S. Chevalier, G. McKercher, K. Birsoy, G. Barnett, C. Brewer, C. Farver, T. Naska, N. Pennell, D. Raymond, C. Schilero, K. Smolenski, F. Williams, C. Morrison, J. Borgia, M. Liptay, M. Pool, C. Seder, K. Junker, L. Omberg, M. Dinkin, G. Manikhas, D. Alvaro, M. Bragazzi, V. Cardinale, G. Carpino, E. Gaudio, D. Chesla, S. Cottingham, M. Dubina, F. Moiseenko, R. Dhanasekaran, K. Becker, K. Janssen, J. Slotta-Huspenina, M. Abdel-Rahman, D. Aziz, S. Bell, C. Cebulla, A. Davis, R. Duell, J. Elder, J. Hilty, B. Kumar, J. Lang, N. Lehman, R. Mandt, P. Nguyen, R. Pilarski, K. Rai, L. Schoenfield, K. Senecal, P. Wakely, P. Hansen, R. Lechan, J. Powers, A. Tischler, W. Grizzle, K. Sexton, A. Kastl, J. Henderson, S. Porten, J. Waldmann, M. Fassnacht, S. Asa, D. Schadendorf, M. Couce, M. Graefen, H. Huland, G. Sauter, T. Schlomm, R. Simon, P. Tennstedt, O. Olabode, M. Nelson, O. Bathe, P. Carroll, J. Chan, P. Disaia, P. Glenn, R. Kelley, C. Landen, J. Phillips, M. Prados, J. Simko, K. Smith-McCune, S. VandenBerg, K. Roggin, A. Fehrenbach, A. Kendler, S. Sifri, R. Steele, A. Jimeno, F. Carey, I. Forgie, M. Mannelli, M. Carney, B. Hernandez, B. Campos, C. Herold-Mende, C. Jungk, A. Unterberg, A. von Deimling, A. Bossler, J. Galbraith, L. Jacobus, M. Knudson, T. Knutson, D. Ma, M. Milhem, R. Sigmund, A. Godwin, R. Madan, H. Rosenthal, C. Adebamowo, S. Adebamowo, A. Boussioutas, D. Beer, T. Giordano, A. Mes-Masson, F. Saad, T. Bocklage, L. Landrum, R. Mannel, K. Moore, K. Moxley, R. Postier, J. Walker, R. Zuna, M. Feldman, F. Valdivieso, R. Dhir, J. Luketich, E. Pinero, M. Quintero-Aguilo, C. Carlotti, J. Santos, R. Kemp, A. Sankarankuty, D. Tirapelli, J. Catto, K. Agnew, E. Swisher, J. Creaney, B. Robinson, C. Shelley, E. Godwin, S. Kendall, C. Shipman, C. Bradford, T. Carey, A. Haddad, J. Moyer, L. Peterson, M. Prince, L. Rozek, G. Wolf, R. Bowman, K. Fong, I. Yang, R. Korst, W. Rathmell, J. Fantacone-Campbell, J. Hooke, A. Kovatich, C. Shriver, J. DiPersio, B. Drake, R. Govindan, S. Heath, T. Ley, B. Tine, P. Westervelt, M. Rubin, J. Lee, N. Aredes, and A. Mariamidze. Cell Systems, 6 (3): 271--281.e7 (March 2018)
DOI: 10.1016/j.cels.2018.03.002

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Calibrating Probability Density Forecasts with Multi-Objective Search.M. Carney, and P. Cunningham. ECAI, volume 141 of Frontiers in Artificial Intelligence and Applications, page 791-792. IOS Press, (2006)Predicting probability distributions for surf height using an ensemble of mixture density networks.M. Carney, P. Cunningham, J. Dowling, and C. Lee. ICML, volume 119 of ACM International Conference Proceeding Series, page 113-120. ACM, (2005)Working the Modes: Understanding the Value of Multiple Modalities of Technologies for Learning and Training Success.E. Smith, R. Tarr, C. Fidopiastis, and M. Carney. HCI (11), volume 9179 of Lecture Notes in Computer Science, page 321-328. Springer, (2015)Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 PatientsA. Kahles, K. Lehmann, N. Toussaint, M. Hüser, S. Stark, T. Sachsenberg, O. Stegle, O. Kohlbacher, C. Sander, S. Caesar-Johnson and 725 other author(s). Cancer Cell, 34 (2): 211--224.e6 (August 2018)Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic PipelinesK. Ellrott, M. Bailey, G. Saksena, K. Covington, C. Kandoth, C. Stewart, J. Hess, S. Ma, K. Chiotti, M. McLellan and 730 other author(s). Cell Systems, 6 (3): 271--281.e7 (March 2018)Making Good Probability Estimates for Regression.M. Carney, and P. Cunningham. ECML, volume 4212 of Lecture Notes in Computer Science, page 582-589. Springer, (2006)Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic PipelinesK. Ellrott, M. Bailey, G. Saksena, K. Covington, C. Kandoth, C. Stewart, J. Hess, S. Ma, K. Chiotti, M. McLellan and 730 other author(s). Cell Systems, 6 (3): 271--281.e7 (March 2018)Synergistic Scaffolding of Technologically-Enhanced STEM Learning in Informal Institutions.L. Lyons, E. Anderson, M. Carney, K. Elinich, R. Lindgren, M. Tscholl, C. Quintana, J. Roberts, J. Wang, S. Yoon and 1 other author(s). ICLS, International Society of the Learning Sciences, (2014)A Comparison of Methods for Implementing Adaptive Security Policies.B. Loe, and M. Carney. USENIX Security Symposium, USENIX Association, (1998)Multiple independent variants at the TERT locus are associated with telomere length and risks of breast and ovarian cancerS. Bojesen, K. Pooley, S. Johnatty, J. Beesley, K. Michailidou, J. Tyrer, S. Edwards, H. Pickett, H. Shen, C. Smart and 427 other author(s). Nature genetics, 45 (4): 371-84, 384e1-2 (2013)

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Disambiguation of "Carney, Michael"

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Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

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Michael Bode

Michael Liecke

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Michael Krug

Michael Bernateck

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BibSonomy

Disambiguation of "Carney, Michael"

copydeleteadd this publication to your clipboardcommunity posthistory of this postURLDOIBibTeXEndNoteAPAChicagoDIN 1505HarvardMSOffice XML Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

Please choose a person to relate this publication to

Michael Bode

Michael Liecke

Michael Schoierer

Michael Krug

Michael Bernateck

Other publications of authors with the same name

Disambiguation

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Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines