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Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition

B. Rodriguez-Martin, E. Alvarez, A. Baez-Ortega, J. Zamora, F. Supek, J. Demeulemeester, M. Santamarina, Y. Ju, J. Temes, D. Garcia-Souto, H. Detering, Y. Li, J. Rodriguez-Castro, A. Dueso-Barroso, A. Bruzos, S. Dentro, M. Blanco, G. Contino, D. Ardeljan, M. Tojo, N. Roberts, S. Zumalave, P. Edwards, J. Weischenfeldt, M. Puiggròs, Z. Chong, K. Chen, E. Lee, J. Wala, K. Raine, A. Butler, S. Waszak, F. Navarro, S. Schumacher, J. Monlong, F. Maura, N. Bolli, G. Bourque, M. Gerstein, P. Park, D. Wedge, R. Beroukhim, D. Torrents, J. Korbel, I. Martincorena, R. Fitzgerald, P. Van Loo, H. Kazazian, K. Burns, K. Akdemir, E. Alvarez, A. Baez-Ortega, R. Beroukhim, P. Boutros, D. Bowtell, B. Brors, K. Burns, P. Campbell, K. Chan, K. Chen, I. Cortés-Ciriano, A. Dueso-Barroso, A. Dunford, P. Edwards, X. Estivill, D. Etemadmoghadam, L. Feuerbach, J. Fink, M. Frenkel-Morgenstern, D. Garsed, M. Gerstein, D. Gordenin, D. Haan, J. Haber, J. Hess, B. Hutter, M. Imielinski, D. Jones, Y. Ju, M. Kazanov, L. Klimczak, Y. Koh, J. Korbel, K. Kumar, E. Lee, J. Lee, Y. Li, A. Lynch, G. Macintyre, F. Markowetz, I. Martincorena, A. Martinez-Fundichely, M. Meyerson, S. Miyano, H. Nakagawa, F. Navarro, S. Ossowski, P. Park, J. Pearson, M. Puiggròs, K. Rippe, N. Roberts, S. Roberts, B. Rodriguez-Martin, S. Schumacher, R. Scully, M. Shackleton, N. Sidiropoulos, L. Sieverling, C. Stewart, D. Torrents, J. Tubio, I. Villasante, N. Waddell, J. Wala, J. Weischenfeldt, L. Yang, X. Yao, S. Yoon, J. Zamora, C. Zhang, P. Campbell, J. Tubio, P. Group, and P. Consortium. Nature Genetics, (2020)
DOI: 10.1038/s41588-019-0562-0

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Pierre Bourque

Guillaume Pierre

Guillaume Klein

Guillaume Wendt

Guillaume Schurgers

Other publications of authors with the same name

Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem CellsX. Chen, H. Xu, P. Yuan, F. Fang, M. Huss, V. Vega, E. Wong, Y. Orlov, W. Zhang, J. Jiang and 13 other author(s). Cell, 133 (6): 1106-1117 (2008)Optimizing ChIP-seq peak detectors using visual labels and supervised machine learning.T. Hocking, P. Goerner-Potvin, A. Morin, X. Shao, T. Pastinen, and G. Bourque. Bioinform., 33 (4): 491-499 (2017)Recovering True Rearrangement Events on Phylogenetic Trees.H. Zhao, and G. Bourque. RECOMB-CG, volume 4751 of Lecture Notes in Computer Science, page 149-161. Springer, (2007)Constrained Dynamic Programming and Supervised Penalty Learning Algorithms for Peak Detection in Genomic Data.T. Hocking, G. Rigaill, P. Fearnhead, and G. Bourque. J. Mach. Learn. Res., (2020)eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data.C. Breeze, A. Reynolds, J. van Dongen, I. Dunham, J. Lazar, S. Neph, J. Vierstra, G. Bourque, A. Teschendorff, J. Stamatoyannopoulos and 1 other author(s). Bioinform., 35 (22): 4767-4769 (2019)Genome-scale evolution: reconstructing gene orders in the ancestral speciesG. Bourque, and P. Pevzner. Genome Res, 12 (1): 26--36 (January 2002)The use of hyperspectral remote sensing to detect PCB contaminated soils in the 0.35 to 12 micron spectral range.J. Lévesque, E. Puckrin, L. Levert, and G. Bourque. IGARSS, page 5968-5971. IEEE, (2019)Prediction of low coverage prone regions for Illumina sequencing projects using a support vector machine.Z. Zheng, B. Schmidt, and G. Bourque. BIBM, page 13-16. IEEE Computer Society, (2010)Maximizing Synteny Blocks to Identify Ancestral Homologs.G. Bourque, Y. Yacef, and N. El-Mabrouk. Comparative Genomics, volume 3678 of Lecture Notes in Computer Science, page 21-34. Springer, (2005)PeakSeg: constrained optimal segmentation and supervised penalty learning for peak detection in count data.T. Hocking, G. Rigaill, and G. Bourque. ICML, volume 37 of JMLR Workshop and Conference Proceedings, page 324-332. JMLR.org, (2015)

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Disambiguation of "Bourque, Guillaume"

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Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition

Please choose a person to relate this publication to

Pierre Bourque

Guillaume Pierre

Guillaume Klein

Guillaume Wendt

Guillaume Schurgers

Other publications of authors with the same name

Disambiguation

BibSonomy

Disambiguation of "Bourque, Guillaume"

copydeleteadd this publication to your clipboardcommunity posthistory of this postURLDOIBibTeXEndNoteAPAChicagoDIN 1505HarvardMSOffice XML Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition

Please choose a person to relate this publication to

Pierre Bourque

Guillaume Pierre

Guillaume Klein

Guillaume Wendt

Guillaume Schurgers

Other publications of authors with the same name

Disambiguation

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DOI
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Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition