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Disambiguation of "Hansen, Kasper D."

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Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.

, , , , , , and . Bioinform., 30 (10): 1363-1369 (2014)

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Christian Kasper

Untersuchung zur Seitenwandkonturierung für Gasturbinen an einem Ringgitter-Wasserkanal. Uni Stuttgart, (2009)

Sabine Kasper

Erich Kasper

Kasper Zechel

Dierk Kasper

 

Other publications of authors with the same name

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce., , , , and . Bioinform., 32 (16): 2551-2553 (2016)Cloud-scale RNA-sequencing differential expression analysis with Myrna., , and . Genome Biol, 11 (8): R83 (2010)differential gene expression is studied "The Myrna pipeline is complementary to existing approaches for RNA-Seq analysis - like ERANGE and Cufflinks. ERANGE attempts to recover junction reads based on the uniquely aligned reads, but only reports RPKM and does not calculate a measure of statistical significance 36 . Cufflinks is more ambitious in its attempt to fully assemble the transcriptome, but bases its differential expression statistics on the Poisson model, which we have shown may not be appropriate for biological replicates 8 . Myrna focuses on the somewhat simpler problem of differential expression analysis between genes, but uses more sophisticated statistical models and integrates the analysis in a computationally efficient pipeline. " "The version of Myrna described here does not make any special attempt to align reads across exon junctions, but this is important future work. Expression signal may be lost by failing to align junction reads; Myrna's focus on just the constitutive portions of genes avoids between-sample or between-gene biases due to this policy. Users can trade off between loss of signal due to junction reads and loss of signal due to repetitive reads by adjusting the -truncate-reads option, which trims all input reads down to a given fixed length before passing them on to the alignment step. We expect that future support for counting junction reads will not severely impact Myrna's performance characteristics; its chief impact will be to add computation to the Align stage, which is currently both the biggest bottleneck and the most easily parallelizable step. ".illuminaio: An open source IDAT parsing tool for Illumina microarrays., , , , and . F1000Research, (2013)Public data and open source tools for multi-assay genomic investigation of disease., , , , , , , , , and 5 other author(s). Briefings Bioinform., 17 (4): 603-615 (2016)Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays., , , , , , and . Bioinform., 30 (10): 1363-1369 (2014)Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments., , , and . BMC Bioinform., (2010)Addressing the mean-correlation relationship in co-expression analysis., , and . PLoS Comput. Biol., (2022)Orchestrating high-throughput genomic analysis with Bioconductor, , , , , , , , , and 16 other author(s). Nature Methods, (January 2015)