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Efficient codon optimization with motif engineering., and . J. Discrete Algorithms, (2012)ViDa: Visualizing DNA hybridization trajectories with biophysics-informed deep graph embeddings., , , , and . CoRR, (2023)Isometric Hamming embeddings of weighted graphs., , , , and . Discret. Appl. Math., (June 2023)An O(n5) Algorithm for MFE Prediction of Kissing Hairpins and 4-Chains in Nucleic Acids., , and . J. Comput. Biol., 16 (6): 803-815 (2009)Visualizing DNA reaction trajectories with deep graph embedding approaches., , and . CoRR, (2023)Linear Time Algorithm for Parsing RNA Secondary Structure., and . WABI, volume 3692 of Lecture Notes in Computer Science, page 341-352. Springer, (2005)densityCut: an efficient and versatile topological approach for automatic clustering of biological data., , and . Bioinform., 32 (17): 2567-2576 (2016)Parsing Nucleic Acid Pseudoknotted Secondary Structure: Algorithm and Applications., and . J. Comput. Biol., 14 (1): 16-32 (2007)Complexity of a Collision-Aware String Partition Problem and Its Relation to Oligo Design for Gene Synthesis., , and . COCOON, volume 5092 of Lecture Notes in Computer Science, page 265-275. Springer, (2008)A System-Level Specification Framework for I/O Architectures., , , and . SPAA, page 138-147. ACM, (1999)