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Testing the semi-explicit assembly solvation model in the SAMPL3 community blind test., , and . J. Comput. Aided Mol. Des., 26 (5): 563-568 (2012)Physical limits of cells and proteomes, , and . Proc. Natl. Acad. Sci. U. S. A., (2011)MOPED: Method for optimizing physical energy parameters using decoys., , , and . J. Comput. Chem., 24 (1): 89-97 (2003)Rotational superposition and least squares: The SVD and quaternions approaches yield identical results. Reply to the preceding comment by G. Kneller., , and . J. Comput. Chem., 26 (15): 1663-1665 (2005)Protein Structure and Energy Landscape Dependence on Sequence Using a Continuous Energy Function., , and . J. Comput. Biol., 4 (3): 227-239 (1997)Proteostasis is adaptive: Balancing chaperone holdases against foldases., , , , and . PLoS Comput. Biol., (2020)Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics, , , , and . The Journal of Chemical Physics, (2007)Bacterial growth laws reflect the evolutionary importance of energy efficiency, and . Proc. Natl. Acad. Sci., (2014)Using motion planning to map protein folding landscapes and analyze folding kinetics of known native structures., , and . RECOMB, page 2-11. ACM, (2002)Predicting Peptide Structures in Native Proteins from Physical Simulations of Fragments., , and . PLoS Comput. Biol., (2009)