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Inferring causal molecular networks: empirical assessment through a community-based effort

S. Hill, L. Heiser, T. Cokelaer, M. Unger, N. Nesser, D. Carlin, Y. Zhang, A. Sokolov, E. Paull, C. Wong, K. Graim, A. Bivol, H. Wang, F. Zhu, B. Afsari, L. Danilova, A. Favorov, W. Lee, D. Taylor, C. Hu, B. Long, D. Noren, A. Bisberg, B. Afsari, R. Al-Ouran, B. Anton, T. Arodz, O. Sichani, N. Bagheri, N. Berlow, A. Bisberg, A. Bivol, A. Bohler, J. Bonet, R. Bonneau, G. Budak, R. Bunescu, M. Caglar, B. Cai, C. Cai, D. Carlin, A. Carlon, L. Chen, M. Ciaccio, T. Cokelaer, G. Cooper, C. Creighton, S. Daneshmand, A. de la Fuente, B. Di Camillo, L. Danilova, J. Dutta-Moscato, K. Emmett, C. Evelo, M. Fassia, A. Favorov, E. Fertig, J. Finkle, F. Finotello, S. Friend, X. Gao, J. Gao, J. Garcia-Garcia, S. Ghosh, A. Giaretta, K. Graim, J. Gray, R. Großeholz, Y. Guan, J. Guinney, C. Hafemeister, O. Hahn, S. Haider, T. Hase, L. Heiser, S. Hill, J. Hodgson, B. Hoff, C. Hsu, C. Hu, Y. Hu, X. Huang, M. Jalili, X. Jiang, T. Kacprowski, L. Kaderali, M. Kang, V. Kannan, M. Kellen, K. Kikuchi, D. Kim, H. Kitano, B. Knapp, G. Komatsoulis, H. Koeppl, A. Krämer, M. Kursa, M. Kutmon, W. Lee, Y. Li, X. Liang, Z. Liu, Y. Liu, B. Long, S. Lu, X. Lu, M. Manfrini, M. Matos, D. Meerzaman, G. Mills, W. Min, S. Mukherjee, C. Müller, R. Neapolitan, N. Nesser, D. Noren, T. Norman, B. Oliva, S. Opiyo, R. Pal, A. Palinkas, E. Paull, J. Planas-Iglesias, D. Poglayen, A. Qutub, J. Saez-Rodriguez, F. Sambo, T. Sanavia, A. Sharifi-Zarchi, J. Slawek, A. Sokolov, M. Song, P. Spellman, A. Streck, G. Stolovitzky, S. Strunz, J. Stuart, D. Taylor, J. Tegnér, K. Thobe, G. Toffolo, E. Trifoglio, M. Unger, Q. Wan, H. Wang, L. Welch, C. Wong, J. Wu, A. Xue, R. Yamanaka, C. Yan, S. Zairis, M. Zengerling, H. Zenil, S. Zhang, Y. Zhang, F. Zhu, Z. Zi, G. Mills, J. Gray, M. Kellen, T. Norman, S. Friend, A. Qutub, E. Fertig, Y. Guan, M. Song, J. Stuart, P. Spellman, H. Koeppl, G. Stolovitzky, J. Saez-Rodriguez, and S. Mukherjee. Nature Methods, 13 (4): 310--318 (Feb 22, 2016)
DOI: 10.1038/nmeth.3773

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Francesca Vidal

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Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene.F. Sambo, F. Finotello, E. Lavezzo, G. Baruzzo, G. Masi, E. Peta, M. Falda, S. Toppo, L. Barzon, and B. Camillo. BMC Bioinform., 19 (1): 343:1-343:10 (2018)nextNEOpi: a comprehensive pipeline for computational neoantigen prediction.D. Rieder, G. Fotakis, M. Ausserhofer, R. Geyeregger, W. Paster, Z. Trajanoski, and F. Finotello. Bioinform., 38 (4): 1131-1132 (2022)EEG signal features extraction based on fractal dimension.F. Finotello, F. Scarpa, and M. Zanon. EMBC, page 4154-4157. IEEE, (2015)Hypoglycemia-induced EEG complexity changes in Type 1 diabetes assessed by fractal analysis algorithm.F. Scarpa, M. Rubega, M. Zanon, F. Finotello, A. Sejling, and G. Sparacino. Biomed. Signal Process. Control., (2017)Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data.F. Finotello, E. Lavezzo, P. Fontana, D. Peruzzo, A. Albiero, L. Barzon, M. Falda, B. Camillo, and S. Toppo. Briefings Bioinform., 13 (3): 269-280 (2012)Reducing bias in RNA sequencing data: a novel approach to compute counts.F. Finotello, E. Lavezzo, L. Bianco, L. Barzon, P. Mazzon, P. Fontana, S. Toppo, and B. Camillo. BMC Bioinform., 15 (S-1): S7 (2014)Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology.G. Sturm, F. Finotello, F. Petitprez, J. Zhang, J. Baumbach, W. Fridman, M. List, and T. Aneichyk. Bioinform., 35 (14): i436-i445 (2019)Inferring causal molecular networks: empirical assessment through a community-based effortS. Hill, L. Heiser, T. Cokelaer, M. Unger, N. Nesser, D. Carlin, Y. Zhang, A. Sokolov, E. Paull, C. Wong and 163 other author(s). Nature Methods, 13 (4): 310--318 (Feb 22, 2016)TIminer: NGS data mining pipeline for cancer immunology and immunotherapy.E. Tappeiner, F. Finotello, P. Charoentong, C. Mayer, D. Rieder, and Z. Trajanoski. Bioinform., 33 (19): 3140-3141 (2017)Interpretable systems biomarkers predict response to immune-checkpoint inhibitors.Ó. Lapuente-Santana, M. van Genderen, P. Hilbers, F. Finotello, and F. Eduati. Patterns, 2 (8): 100293 (2021)

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Disambiguation of "Finotello, Francesca"

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Inferring causal molecular networks: empirical assessment through a community-based effort

Please choose a person to relate this publication to

Francesca Vidal

Francesca Pilotto

Francesca Dordei

Francesca Schinzinger

Francesca Diana

Other publications of authors with the same name

Disambiguation

BibSonomy

Disambiguation of "Finotello, Francesca"

copydeleteadd this publication to your clipboardcommunity posthistory of this postURLDOIBibTeXEndNoteAPAChicagoDIN 1505HarvardMSOffice XML Inferring causal molecular networks: empirical assessment through a community-based effort

Please choose a person to relate this publication to

Francesca Vidal

Francesca Pilotto

Francesca Dordei

Francesca Schinzinger

Francesca Diana

Other publications of authors with the same name

Disambiguation

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Inferring causal molecular networks: empirical assessment through a community-based effort