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PINCAGE: probabilistic integration of cancer genomics data for perturbed gene identification and sample classification., , , , and . Bioinform., 32 (9): 1353-1365 (2016)A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data., , , , , , , and . BMC Bioinform., 19 (1): 147:1-147:15 (2018)Next-Generation Sequencing of RNA and DNA Isolated from Paired Fresh-Frozen and Formalin-Fixed Paraffin-Embedded Samples of Human Cancer and Normal Tissue, , , , , , , , , and 6 other author(s). PLOS ONE, 9 (5): 1-16 (May 2014)Significance evaluation in factor graphs., , , and . BMC Bioinform., 18 (1): 199:1-199:12 (2017)ncdDetect2: improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation., , , , , , and . Bioinform., 35 (2): 189-199 (2019)Gene finding with a hidden Markov model of genome structure and evolution., and . Bioinform., 19 (2): 219-227 (2003)ProbFold: a probabilistic method for integration of probing data in RNA secondary structure prediction., , and . Bioinform., 32 (17): 2626-2635 (2016)Regmex: a statistical tool for exploring motifs in ranked sequence lists from genomics experiments., , , , and . Algorithms Mol. Biol., 13 (1): 17:1-17:11 (2018)The UCSC Genome Browser Database: update 2006., , , , , , , , , and 17 other author(s). Nucleic Acids Res., 34 (Database-Issue): 590-598 (2006)Analyses of non-coding somatic drivers in 2,658 cancer whole genomes., , , , , , , , , and 179 other author(s). Nat., 578 (7793): 102-111 (2020)