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The identification of functional modules from the genomic association of genes, , and . Proceedings of the National Academy of Sciences, 99 (9): 5890--5895 (Apr 30, 2002)Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution., , , and . Journal of the Royal Society, Interface / the Royal Society, 5 (19): 151--170 (Feb 6, 2008)The properties of protein family space depend on experimental design., , , and . Bioinform., 21 (11): 2618-2622 (2005)Inferring metabolic states in uncharacterized environments using gene-expression measurements, , and . PLoS Comput. Biol., (2013)Pathway alignment: Application in the comparative analysis of glycolysis., , , and . German Conference on Bioinformatics, Oxford University Press, (1998)Optimized design and assessment of whole genome tiling arrays., , , , , , and . ISMB/ECCB (Supplement of Bioinformatics), page 195-204. (2007)Base Pairing Probabilities in a Complete HIV-1 RNA., , , and . J. Comput. Biol., 3 (2): 253-274 (1996)FACIL: Fast and Accurate Genetic Code Inference and Logo., , , , , , , , , and 3 other author(s). Bioinform., 27 (14): 1929-1933 (2011)WeGET: predicting new genes for molecular systems by weighted co-expression., , , , , , and . Nucleic Acids Res., 44 (Database-Issue): 567-573 (2016)STRING: known and predicted protein-protein associations, integrated and transferred across organisms., , , , , , , , and . Nucleic Acids Res., 33 (Database-Issue): 433-437 (2005)