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Phylogenetic Networks, Trees, and Clusters.

, and . International Conference on Computational Science (2), volume 3515 of Lecture Notes in Computer Science, page 919-926. Springer, (2005)

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Enhanced position weight matrices using mixture models., and . ISMB (Supplement of Bioinformatics), page 204-212. (2005)Exact-IEBP: A New Technique for Estimating Evolutionary Distances between Whole Genomes.. WABI, volume 2149 of Lecture Notes in Computer Science, page 175-188. Springer, (2001)RIATA-HGT: A Fast and Accurate Heuristic for Reconstructing Horizontal Gene Transfer., , and . COCOON, volume 3595 of Lecture Notes in Computer Science, page 84-93. Springer, (2005)PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences., , , , , and . J. Comput. Biol., 22 (5): 377-386 (2015)Reconstructing Chromosomal Evolution., and . SIAM J. Comput., 36 (1): 99-131 (2006)SparkINFERNO: a scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants., , , , , , , , , and 2 other author(s). Bioinform., 36 (12): 3879-3881 (2020)Omnibus and robust deconvolution scheme for bulk RNA sequencing data integrating multiple single-cell reference sets and prior biological knowledge., , , , and . Bioinform., 38 (19): 4530-4536 (2022)DRAW+SneakPeek: Analysis workflow and quality metric management for DNA-seq experiments., , , , , , , , and . Bioinform., 29 (19): 2498-2500 (2013)Improving Genome Rearrangement Phylogeny Using Sequence-Style Parsimony., and . BIBE, page 137-144. IEEE Computer Society, (2005)Dense subgraph computation via stochastic search: application to detect transcriptional modules., , and . ISMB (Supplement of Bioinformatics), page 117-123. (2006)