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A wide repertoire of miRNA binding sites: prediction and functional implications., , and . Bioinform., 27 (22): 3093-3101 (2011)Preferential use of protein domain pairs as interaction mediators: order and transitivity., , and . Bioinform., 26 (20): 2564-2570 (2010)A functional selection model explains evolutionary robustness despite plasticity in regulatory networks, , , , and . Molecular Systems Biology, 8 (1): n/a (Oct 23, 2012)A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval., , , and . PLoS Comput. Biol., (2008)Markovian domain fingerprinting: statistical segmentation of protein sequences., , , and . Bioinform., 17 (10): 927-934 (2001)Towards an Integrated Protein-Protein Interaction Network: A Relational Markov Network Approach., , , and . J. Comput. Biol., 13 (2): 145-164 (2006)PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites., , , and . Nucleic Acids Res., 29 (1): 277-0 (2001)Predicting Transcription Factor Binding Sites Using Structural Knowledge., , and . RECOMB, volume 3500 of Lecture Notes in Computer Science, page 522-537. Springer, (2005)Ab Initio Prediction of Transcription Factor Targets Using Structural Knowledge., , and . PLoS Comput. Biol., (2005)A Structure-Based Approach for Prediction of Protein Binding Sites in Gene-Upstream Regions., , and . Pacific Symposium on Biocomputing, page 139-150. (2001)